Variant report

Variant	rs7080890
Chromosome Location	chr10:116515430-116515431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11593472	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11598354	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12761207	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12761991	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12763449	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763784	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767625	0.80[EUR][1000 genomes]
rs12767713	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12783562	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12785140	0.88[ASN][1000 genomes]
rs17720374	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17794002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34105246	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34202625	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34366626	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34751270	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35736355	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35927479	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36021781	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55633935	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58719367	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59254826	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61870569	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7073405	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7075095	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7082250	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7092145	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs719894	0.88[ASN][1000 genomes]
rs7902647	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919367	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808325	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116509000-116517200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:116513000-116515600	Enhancers	Adipose Nuclei	Adipose
3	chr10:116513000-116515800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:116513600-116515600	Enhancers	Left Ventricle	heart
5	chr10:116513600-116516200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:116513800-116515600	Enhancers	Fetal Intestine Small	intestine
7	chr10:116513800-116515600	Enhancers	Right Atrium	heart
8	chr10:116513800-116527000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:116514000-116515600	Enhancers	Liver	Liver
10	chr10:116514000-116516000	Enhancers	Fetal Intestine Large	intestine
11	chr10:116514200-116515600	Enhancers	Small Intestine	intestine
12	chr10:116514600-116517800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:116514800-116515600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:116514800-116515600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:116514800-116516000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:116514800-116517400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:116514800-116517600	Weak transcription	NHEK	skin
18	chr10:116514800-116517800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:116515000-116515600	Enhancers	Hela-S3	cervix
20	chr10:116515000-116517200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:116515000-116517200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:116515000-116517200	Weak transcription	HMEC	breast
23	chr10:116515000-116517400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:116515000-116518000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:116515000-116519400	Weak transcription	Brain Substantia Nigra	brain
26	chr10:116515000-116527400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:116515200-116515600	Enhancers	Primary hematopoietic stem cells	blood
28	chr10:116515200-116517600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:116515200-116518200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:116515400-116515600	Enhancers	Pancreas	Pancrea
31	chr10:116515400-116516600	Weak transcription	Brain Anterior Caudate	brain
32	chr10:116515400-116516600	Weak transcription	Fetal Heart	heart
33	chr10:116515400-116521200	Weak transcription	Right Ventricle	heart

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