Variant report

Variant	rs10060753
Chromosome Location	chr5:147765015-147765016
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:147762988-147766064	HepG2	liver:	n/a	n/a
2	POLR2A	chr5:147762869-147765300	IMR90	lung:	n/a	n/a
3	POLR2A	chr5:147764886-147765186	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr5:147764732-147765521	HepG2	liver:	n/a	n/a
5	POLR2A	chr5:147763134-147766648	K562	blood:	n/a	n/a
6	POLR2A	chr5:147762108-147766732	MCF10A-Er-Src	breast:	n/a	n/a
7	POLR2A	chr5:147762560-147765195	GM12878	blood:	n/a	n/a
8	POLR2A	chr5:147762182-147766645	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr5:147764956-147765549	GM12878	blood:	n/a	n/a
10	POLR2A	chr5:147762536-147765992	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:147764022..147766903-chr5:147772422..147774859,3	K562	blood:
2	chr5:147762466..147766033-chr5:147774810..147779515,8	K562	blood:
3	chr5:147762735..147765811-chr5:147775100..147779684,6	MCF-7	breast:
4	chr5:147761605..147765923-chr5:147767275..147775967,11	MCF-7	breast:
5	chr5:147763737..147767286-chr5:147777906..147782200,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000247199	TF binding region
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10035818	0.81[CEU][hapmap]
rs10037318	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10041283	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10042369	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10043775	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10044054	0.83[CEU][hapmap]
rs10044061	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10051223	0.81[CEU][hapmap]
rs10055430	0.81[CEU][hapmap]
rs10056586	0.81[ASN][1000 genomes]
rs10060623	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10068216	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10072051	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10072817	0.82[ASN][1000 genomes]
rs10072958	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10077690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10477376	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10515610	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12513547	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs12516267	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12519039	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12521065	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12717973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12717974	0.80[ASN][1000 genomes]
rs13157347	0.82[ASN][1000 genomes]
rs13174567	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13354454	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13358385	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1363707	0.82[CEU][hapmap]
rs1422976	0.82[CEU][hapmap]
rs1582519	0.81[CEU][hapmap]
rs17108251	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17719763	0.86[CEU][hapmap]
rs17720155	0.81[CEU][hapmap]
rs17776554	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17776882	0.81[CEU][hapmap]
rs2112761	0.81[CEU][hapmap]
rs2400510	0.86[CEU][hapmap]
rs34685718	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36028618	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3734120	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs3749689	0.82[CEU][hapmap]
rs3749690	0.80[CEU][hapmap]
rs4349707	0.81[CEU][hapmap];0.93[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4574534	0.86[EUR][1000 genomes]
rs4599524	0.81[CEU][hapmap]
rs4639212	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4705248	0.85[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4705249	0.81[CEU][hapmap]
rs4705251	0.86[ASN][1000 genomes]
rs4705252	0.81[CEU][hapmap]
rs60625004	0.82[ASN][1000 genomes]
rs6580545	0.80[CEU][hapmap]
rs6580546	0.82[CEU][hapmap]
rs6861078	0.81[CEU][hapmap]
rs6876982	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap]
rs6884076	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6892647	0.81[CEU][hapmap]
rs7722458	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7727161	0.80[ASN][1000 genomes]
rs7729309	0.81[CEU][hapmap]
rs7731526	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7734458	0.80[CEU][hapmap]
rs7736019	0.86[CEU][hapmap]
rs9325094	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9325095	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9325097	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9325098	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147763800-147765200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:147763800-147765200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:147764000-147765200	Flanking Active TSS	Rectal Smooth Muscle	rectum
4	chr5:147764000-147765200	Flanking Active TSS	Hela-S3	cervix
5	chr5:147764000-147765600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:147764200-147765200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:147764200-147765200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr5:147764200-147765200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr5:147764200-147765400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:147764200-147765600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:147764200-147765600	Flanking Active TSS	HepG2	liver
12	chr5:147764200-147765800	Flanking Active TSS	Dnd41	blood
13	chr5:147764200-147766200	Enhancers	Spleen	Spleen
14	chr5:147764400-147765200	Enhancers	Primary B cells from cord blood	blood
15	chr5:147764400-147765200	Enhancers	Fetal Kidney	kidney
16	chr5:147764400-147765200	Enhancers	Small Intestine	intestine
17	chr5:147764400-147765400	Weak transcription	Ovary	ovary
18	chr5:147764400-147765600	Enhancers	Colonic Mucosa	Colon
19	chr5:147764400-147765600	Weak transcription	Left Ventricle	heart
20	chr5:147764400-147765800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:147764400-147765800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr5:147764400-147765800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:147764400-147765800	Enhancers	Brain Substantia Nigra	brain
24	chr5:147764400-147765800	Enhancers	Fetal Intestine Large	intestine
25	chr5:147764400-147765800	Enhancers	Lung	lung
26	chr5:147764400-147765800	Enhancers	Placenta Amnion	Placenta Amnion
27	chr5:147764400-147766000	Enhancers	Primary B cells from peripheral blood	blood
28	chr5:147764400-147766000	Enhancers	Gastric	stomach
29	chr5:147764400-147766000	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr5:147764400-147766200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr5:147764400-147766200	Enhancers	Primary T cells fromperipheralblood	blood
32	chr5:147764400-147766200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr5:147764400-147766200	Enhancers	Pancreas	Pancrea
34	chr5:147764400-147766800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr5:147764400-147767400	Weak transcription	Placenta	Placenta
36	chr5:147764400-147768000	Weak transcription	Aorta	Aorta
37	chr5:147764400-147773000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr5:147764400-147777200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr5:147764400-147789800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:147764400-147795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr5:147764600-147765200	Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr5:147764600-147765200	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr5:147764600-147765200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr5:147764600-147765200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr5:147764600-147765200	Enhancers	Fetal Lung	lung
48	chr5:147764600-147765200	Enhancers	Fetal Muscle Leg	muscle
49	chr5:147764600-147765200	Enhancers	Fetal Thymus	thymus
50	chr5:147764600-147765200	Weak transcription	Right Ventricle	heart

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