Variant report

Variant	rs17720155
Chromosome Location	chr5:147779935-147779936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:147779842-147779974	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:147777173..147781604-chr5:147805293..147807681,4	MCF-7	breast:
2	chr5:147778531..147781784-chr5:147791686..147795349,4	K562	blood:
3	chr5:147763737..147767286-chr5:147777906..147782200,4	K562	blood:

Variant related genes	Relation type
FBXO38	TF binding region
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10035818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10036053	0.83[ASN][1000 genomes]
rs10041283	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10042369	0.83[EUR][1000 genomes]
rs10043775	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10044054	0.87[AFR][1000 genomes]
rs10044061	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10050560	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs10051223	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10055332	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10055430	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10057472	0.86[ASN][1000 genomes]
rs10060623	0.88[EUR][1000 genomes]
rs10060753	0.81[CEU][hapmap]
rs10068216	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10072051	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10077690	0.85[CEU][hapmap]
rs10079420	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10477376	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11168046	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11168047	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1128450	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12513547	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12717971	0.86[ASN][1000 genomes]
rs12717973	0.85[CEU][hapmap]
rs13174567	0.82[EUR][1000 genomes]
rs13354454	0.87[EUR][1000 genomes]
rs1345741	0.86[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1363704	0.84[ASN][1000 genomes]
rs1363705	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1363707	0.84[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1422968	0.86[ASN][1000 genomes]
rs1422970	0.86[ASN][1000 genomes]
rs1422976	0.83[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap]
rs1422977	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17108251	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17719662	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17719763	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs17719873	0.86[ASN][1000 genomes]
rs17776674	0.86[ASN][1000 genomes]
rs17776882	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17777066	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1862431	0.84[ASN][1000 genomes]
rs1984789	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2037997	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2112761	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28442279	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28617172	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2895761	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34685718	0.88[EUR][1000 genomes]
rs35700061	0.86[ASN][1000 genomes]
rs36028618	0.88[EUR][1000 genomes]
rs3734120	1.00[CEU][hapmap]
rs3734121	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3749689	0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs3925019	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4349707	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4406123	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4599524	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4599526	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4639212	0.87[EUR][1000 genomes]
rs4639213	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705247	0.86[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs4705249	0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4705253	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6580544	0.84[ASN][1000 genomes]
rs6580545	0.83[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs6580546	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs6861078	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6875795	0.86[ASN][1000 genomes]
rs6876308	0.86[ASN][1000 genomes]
rs6884076	1.00[CEU][hapmap]
rs6886203	0.84[ASN][1000 genomes]
rs6892647	0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7700502	0.81[EUR][1000 genomes]
rs7712350	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7713927	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7727320	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7728004	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7730707	0.84[ASN][1000 genomes]
rs7733401	0.89[EUR][1000 genomes]
rs7736019	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9325095	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9325096	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9325097	1.00[CEU][hapmap]
rs9325098	1.00[CEU][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764400-147789800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:147764400-147795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:147765000-147784600	Weak transcription	Fetal Stomach	stomach
6	chr5:147765200-147796200	Weak transcription	Esophagus	oesophagus
7	chr5:147765600-147784200	Weak transcription	Colonic Mucosa	Colon
8	chr5:147765800-147789600	Weak transcription	Lung	lung
9	chr5:147766200-147789600	Weak transcription	Spleen	Spleen
10	chr5:147766400-147780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:147768200-147805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:147768400-147789800	Weak transcription	Aorta	Aorta
13	chr5:147772200-147780800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr5:147772600-147789600	Weak transcription	Gastric	stomach
15	chr5:147772600-147808000	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr5:147772600-147808800	Strong transcription	Dnd41	blood
17	chr5:147772800-147788400	Weak transcription	Psoas Muscle	Psoas
18	chr5:147772800-147809400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:147773000-147782400	Weak transcription	Right Atrium	heart
20	chr5:147773000-147784000	Weak transcription	Fetal Brain Male	brain
21	chr5:147773400-147789800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr5:147773600-147786000	Strong transcription	Primary T cells from cord blood	blood
23	chr5:147773600-147808800	Strong transcription	Fetal Thymus	thymus
24	chr5:147773800-147784600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:147773800-147796200	Strong transcription	HSMM	muscle
26	chr5:147774000-147780600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:147774000-147780800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:147774000-147809400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:147774200-147781200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr5:147774200-147800400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:147774200-147809000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr5:147774400-147780200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:147774400-147781000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:147774400-147807800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr5:147774600-147780600	Strong transcription	NHDF-Ad	bronchial
36	chr5:147774800-147781600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr5:147775000-147781600	Weak transcription	NHEK	skin
38	chr5:147775400-147781400	Strong transcription	GM12878-XiMat	blood
39	chr5:147775400-147801600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr5:147776400-147780200	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr5:147776400-147789800	Weak transcription	Pancreas	Pancrea
42	chr5:147776600-147780000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr5:147777200-147780200	Strong transcription	Osteobl	bone
44	chr5:147777200-147808000	Strong transcription	Fetal Muscle Trunk	muscle
45	chr5:147777400-147780400	Strong transcription	Brain Angular Gyrus	brain
46	chr5:147777400-147785800	Strong transcription	HMEC	breast
47	chr5:147777400-147823200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr5:147777600-147780400	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr5:147777600-147807600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr5:147777600-147809600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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