Variant report

Variant	rs10055332
Chromosome Location	chr5:147791214-147791215
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10035818	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10041283	0.86[EUR][1000 genomes]
rs10042369	0.83[EUR][1000 genomes]
rs10043775	0.83[EUR][1000 genomes]
rs10044061	0.86[EUR][1000 genomes]
rs10051223	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10055430	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057472	0.85[AFR][1000 genomes]
rs10060623	0.88[EUR][1000 genomes]
rs10068216	0.86[EUR][1000 genomes]
rs10072051	0.86[EUR][1000 genomes]
rs10079420	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10477376	0.88[EUR][1000 genomes]
rs11168046	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11168047	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1128450	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12513547	0.81[EUR][1000 genomes]
rs13174567	0.82[EUR][1000 genomes]
rs13354454	0.87[EUR][1000 genomes]
rs1345741	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1363705	0.81[AMR][1000 genomes]
rs1363707	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1422977	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17108251	0.86[EUR][1000 genomes]
rs17720155	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17776882	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17777066	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1984789	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2037997	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2112761	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28442279	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28617172	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34685718	0.88[EUR][1000 genomes]
rs36028618	0.88[EUR][1000 genomes]
rs3734121	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3925019	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4349707	0.88[EUR][1000 genomes]
rs4406123	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4599524	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4599526	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4639212	0.87[EUR][1000 genomes]
rs4639213	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705253	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6861078	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7700502	0.81[EUR][1000 genomes]
rs7712350	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7713927	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7727320	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7728004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733401	0.89[EUR][1000 genomes]
rs7736019	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9325095	0.88[EUR][1000 genomes]
rs9325096	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764400-147795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:147765200-147796200	Weak transcription	Esophagus	oesophagus
5	chr5:147768200-147805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:147772600-147808000	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr5:147772600-147808800	Strong transcription	Dnd41	blood
8	chr5:147772800-147809400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:147773600-147808800	Strong transcription	Fetal Thymus	thymus
10	chr5:147773800-147796200	Strong transcription	HSMM	muscle
11	chr5:147774000-147809400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:147774200-147800400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:147774200-147809000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr5:147774400-147807800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr5:147775400-147801600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr5:147777200-147808000	Strong transcription	Fetal Muscle Trunk	muscle
17	chr5:147777400-147823200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:147777600-147807600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:147777600-147809600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:147778000-147807600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:147778400-147792800	Strong transcription	K562	blood
22	chr5:147778400-147808200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr5:147778400-147809400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:147778400-147823400	Strong transcription	Placenta	Placenta
25	chr5:147778600-147798600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr5:147778600-147809400	Strong transcription	Liver	Liver
27	chr5:147778800-147798400	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr5:147778800-147800400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr5:147778800-147803200	Weak transcription	Small Intestine	intestine
30	chr5:147778800-147808200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr5:147778800-147809400	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr5:147778800-147822000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr5:147779000-147795400	Weak transcription	Fetal Intestine Small	intestine
34	chr5:147779000-147796200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr5:147779000-147796600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr5:147779000-147808800	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr5:147779000-147809200	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr5:147779000-147814400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr5:147779200-147796600	Weak transcription	Stomach Mucosa	stomach
40	chr5:147779200-147808800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr5:147779800-147799400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:147780800-147808600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr5:147781200-147795200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr5:147781200-147805200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr5:147781400-147798800	Strong transcription	NHDF-Ad	bronchial
46	chr5:147781800-147796200	Strong transcription	NH-A	brain
47	chr5:147781800-147796200	Strong transcription	Osteobl	bone
48	chr5:147781800-147799600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr5:147781800-147809000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr5:147781800-147809000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links