Variant report

Variant	rs4349707
Chromosome Location	chr5:147788438-147788439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr5:147788438-147788516	HepG2	liver:	n/a	n/a
2	E2F4	chr5:147788379-147788489	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147780980..147782546-chr5:147786554..147788474,2	MCF-7	breast:

Variant related genes	Relation type
FBXO38	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10035818	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10041283	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10042369	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10043775	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10044061	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10051223	0.95[CEU][hapmap]
rs10055332	0.88[EUR][1000 genomes]
rs10055430	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs10056586	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10060623	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10060753	0.81[CEU][hapmap];0.93[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10068216	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10072051	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10077690	0.84[CEU][hapmap];0.93[CHB][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10079420	0.83[EUR][1000 genomes]
rs10477376	1.00[CEU][hapmap];0.93[CHB][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168046	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs11168047	0.83[EUR][1000 genomes]
rs1128450	0.81[EUR][1000 genomes]
rs12513547	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12717973	0.84[CEU][hapmap];0.93[CHB][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12717974	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13174567	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13354454	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1345741	0.81[CEU][hapmap]
rs17108251	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17720155	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17776882	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs1971431	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1984789	0.95[CEU][hapmap]
rs2112761	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs34269182	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34685718	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36028618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3734120	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3925019	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs4274967	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4274968	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4472255	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4574533	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4574534	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4599524	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs4599526	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs4639212	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4639213	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs4705247	0.81[CEU][hapmap]
rs4705253	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs60625004	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6861078	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs6876982	0.93[CHB][hapmap]
rs6884076	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7700502	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7727161	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7728004	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs7736019	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9325095	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9325096	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs9325097	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9325098	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764400-147789800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:147764400-147795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:147765200-147796200	Weak transcription	Esophagus	oesophagus
6	chr5:147765800-147789600	Weak transcription	Lung	lung
7	chr5:147766200-147789600	Weak transcription	Spleen	Spleen
8	chr5:147768200-147805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:147768400-147789800	Weak transcription	Aorta	Aorta
10	chr5:147772600-147789600	Weak transcription	Gastric	stomach
11	chr5:147772600-147808000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr5:147772600-147808800	Strong transcription	Dnd41	blood
13	chr5:147772800-147809400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:147773400-147789800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:147773600-147808800	Strong transcription	Fetal Thymus	thymus
16	chr5:147773800-147796200	Strong transcription	HSMM	muscle
17	chr5:147774000-147809400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:147774200-147800400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:147774200-147809000	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:147774400-147807800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr5:147775400-147801600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr5:147776400-147789800	Weak transcription	Pancreas	Pancrea
23	chr5:147777200-147808000	Strong transcription	Fetal Muscle Trunk	muscle
24	chr5:147777400-147823200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:147777600-147807600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr5:147777600-147809600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr5:147778000-147807600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr5:147778400-147792800	Strong transcription	K562	blood
29	chr5:147778400-147808200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr5:147778400-147809400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:147778400-147823400	Strong transcription	Placenta	Placenta
32	chr5:147778600-147791200	Strong transcription	HepG2	liver
33	chr5:147778600-147798600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr5:147778600-147809400	Strong transcription	Liver	Liver
35	chr5:147778800-147798400	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr5:147778800-147800400	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr5:147778800-147803200	Weak transcription	Small Intestine	intestine
38	chr5:147778800-147808200	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr5:147778800-147809400	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr5:147778800-147822000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr5:147779000-147789000	Weak transcription	Right Ventricle	heart
42	chr5:147779000-147795400	Weak transcription	Fetal Intestine Small	intestine
43	chr5:147779000-147796200	Strong transcription	Duodenum Mucosa	Duodenum
44	chr5:147779000-147796600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr5:147779000-147808800	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr5:147779000-147809200	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr5:147779000-147814400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr5:147779200-147796600	Weak transcription	Stomach Mucosa	stomach
49	chr5:147779200-147808800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr5:147779800-147799400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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