Variant report

Variant	rs3925019
Chromosome Location	chr5:147776126-147776127
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:147775999-147776644	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:147772901..147774477-chr5:147776015..147778379,3	K562	blood:
2	chr5:147768135..147770524-chr5:147775300..147778103,2	MCF-7	breast:
3	chr5:147762735..147765811-chr5:147775100..147779684,6	MCF-7	breast:
4	chr5:147762466..147766033-chr5:147774810..147779515,8	K562	blood:
5	chr5:147771234..147773372-chr5:147775172..147777361,2	MCF-7	breast:
6	chr5:147763628..147766033-chr5:147775829..147777852,2	K562	blood:
7	chr5:147768995..147770771-chr5:147775517..147777372,2	K562	blood:

No data

Variant related genes	Relation type
FBXO38	TF binding region
ENSG00000145868	Chromatin interaction
ENSG00000247199	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10035818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10036053	0.84[ASN][1000 genomes]
rs10041283	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10042369	0.81[EUR][1000 genomes]
rs10043775	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs10044054	0.81[AFR][1000 genomes]
rs10044061	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10050560	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10051223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10055332	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10055430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10057472	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10060623	0.86[EUR][1000 genomes]
rs10068216	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10072051	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10077690	0.81[CEU][hapmap]
rs10079420	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10477376	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs11168046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11168047	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1128450	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12513547	0.95[CEU][hapmap]
rs12717971	0.87[ASN][1000 genomes]
rs12717973	0.81[CEU][hapmap]
rs13354454	0.84[EUR][1000 genomes]
rs1345741	0.86[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1363704	0.86[ASN][1000 genomes]
rs1363705	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1363707	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1422968	0.87[ASN][1000 genomes]
rs1422970	0.87[ASN][1000 genomes]
rs1422976	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs1422977	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17108251	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs17719662	0.86[ASN][1000 genomes]
rs17719763	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17719873	0.87[ASN][1000 genomes]
rs17720155	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17776674	0.87[ASN][1000 genomes]
rs17776882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17777066	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1862431	0.86[ASN][1000 genomes]
rs1984789	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2037997	0.83[EUR][1000 genomes]
rs2112761	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28442279	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28617172	0.86[EUR][1000 genomes]
rs2895761	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34685718	0.86[EUR][1000 genomes]
rs35700061	0.87[ASN][1000 genomes]
rs36028618	0.86[EUR][1000 genomes]
rs3734120	0.95[CEU][hapmap]
rs3734121	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3749689	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4349707	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs4406123	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4599524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4599526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4639212	0.84[EUR][1000 genomes]
rs4639213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4705247	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4705249	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4705253	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6580544	0.86[ASN][1000 genomes]
rs6580545	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6580546	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6861078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6875795	0.87[ASN][1000 genomes]
rs6876308	0.87[ASN][1000 genomes]
rs6884076	0.94[CEU][hapmap]
rs6886203	0.86[ASN][1000 genomes]
rs6892647	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7712350	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7713927	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7727320	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7728004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7730707	0.86[ASN][1000 genomes]
rs7733401	0.86[EUR][1000 genomes]
rs7736019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9325095	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs9325096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9325097	0.94[CEU][hapmap]
rs9325098	0.95[CEU][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764400-147777200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:147764400-147789800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:147764400-147795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:147764800-147777400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:147765000-147784600	Weak transcription	Fetal Stomach	stomach
8	chr5:147765200-147777600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:147765200-147778400	Weak transcription	Fetal Kidney	kidney
10	chr5:147765200-147778600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:147765200-147796200	Weak transcription	Esophagus	oesophagus
12	chr5:147765600-147778600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:147765600-147784200	Weak transcription	Colonic Mucosa	Colon
14	chr5:147765800-147778600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr5:147765800-147789600	Weak transcription	Lung	lung
16	chr5:147766200-147778000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:147766200-147778600	Weak transcription	HSMMtube	muscle
18	chr5:147766200-147789600	Weak transcription	Spleen	Spleen
19	chr5:147766400-147780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:147766600-147778400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:147767200-147778600	Weak transcription	NHLF	lung
22	chr5:147768200-147778400	Weak transcription	Brain Anterior Caudate	brain
23	chr5:147768200-147805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr5:147768400-147789800	Weak transcription	Aorta	Aorta
25	chr5:147769200-147778600	Weak transcription	Fetal Muscle Leg	muscle
26	chr5:147771000-147776200	Weak transcription	Ovary	ovary
27	chr5:147771200-147776200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr5:147772200-147776800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr5:147772200-147780800	Strong transcription	Primary B cells from peripheral blood	blood
30	chr5:147772400-147776400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
31	chr5:147772600-147777200	Strong transcription	Primary B cells from cord blood	blood
32	chr5:147772600-147789600	Weak transcription	Gastric	stomach
33	chr5:147772600-147808000	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr5:147772600-147808800	Strong transcription	Dnd41	blood
35	chr5:147772800-147776200	Weak transcription	Left Ventricle	heart
36	chr5:147772800-147776400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr5:147772800-147777400	Weak transcription	Right Ventricle	heart
38	chr5:147772800-147788400	Weak transcription	Psoas Muscle	Psoas
39	chr5:147772800-147809400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:147773000-147779600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:147773000-147782400	Weak transcription	Right Atrium	heart
42	chr5:147773000-147784000	Weak transcription	Fetal Brain Male	brain
43	chr5:147773200-147776200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr5:147773200-147776200	Weak transcription	Pancreas	Pancrea
45	chr5:147773200-147777000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr5:147773200-147778000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr5:147773400-147776200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr5:147773400-147777600	Weak transcription	Small Intestine	intestine
49	chr5:147773400-147778600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr5:147773400-147789800	Weak transcription	H9 Cell Line	embryonic stem cell

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