Variant report

Variant	rs17777066
Chromosome Location	chr5:147835110-147835111
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147829020..147831724-chr5:147834010..147835785,2	K562	blood:
2	chr5:147828231..147830520-chr5:147834285..147837059,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10035818	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10041283	0.95[CEU][hapmap]
rs10042369	0.84[EUR][1000 genomes]
rs10043775	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs10044061	0.95[CEU][hapmap]
rs10050560	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs10051223	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10055332	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10055430	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10056586	0.86[EUR][1000 genomes]
rs10068216	0.95[CEU][hapmap]
rs10072051	0.95[CEU][hapmap]
rs10077690	0.81[CEU][hapmap]
rs10079420	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10477376	0.95[CEU][hapmap]
rs11168046	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11168047	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1128450	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12513547	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs12717973	0.81[CEU][hapmap]
rs12717974	0.82[EUR][1000 genomes]
rs13174567	0.86[EUR][1000 genomes]
rs13354454	0.81[EUR][1000 genomes]
rs1345741	0.86[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1363707	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1422976	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs17108251	0.95[CEU][hapmap]
rs17719763	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs17720155	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17776882	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1971431	0.86[EUR][1000 genomes]
rs1984789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2037997	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2112761	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28617172	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34269182	0.86[EUR][1000 genomes]
rs3734120	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs3734121	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3749689	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs3925019	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4274967	0.86[EUR][1000 genomes]
rs4274968	0.86[EUR][1000 genomes]
rs4349707	0.95[CEU][hapmap]
rs4472255	0.86[EUR][1000 genomes]
rs4574533	0.86[EUR][1000 genomes]
rs4599524	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4599526	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4639212	0.81[EUR][1000 genomes]
rs4639213	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4705247	0.86[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs4705249	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4705253	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60625004	0.85[EUR][1000 genomes]
rs6580545	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6580546	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs6861078	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6884076	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs6892647	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7700502	0.84[EUR][1000 genomes]
rs7713927	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7727161	0.86[EUR][1000 genomes]
rs7727320	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7728004	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7733401	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7736019	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9325095	0.95[CEU][hapmap]
rs9325096	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9325097	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs9325098	0.95[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147808000-147835400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:147822400-147839200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:147831800-147837000	Enhancers	Fetal Heart	heart
4	chr5:147832400-147837000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:147833400-147835200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr5:147833400-147835400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:147833400-147835600	Weak transcription	Right Atrium	heart
8	chr5:147833600-147835200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr5:147833600-147835200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:147833600-147835200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:147833600-147836800	Enhancers	Brain Germinal Matrix	brain
12	chr5:147834000-147835200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:147834000-147835200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:147834000-147835200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:147834200-147835200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:147834200-147835200	Enhancers	Liver	Liver
17	chr5:147834200-147835600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr5:147834200-147835600	Enhancers	Left Ventricle	heart
19	chr5:147834400-147835200	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr5:147834400-147835200	Enhancers	Fetal Intestine Large	intestine
21	chr5:147834400-147835200	Enhancers	Fetal Intestine Small	intestine
22	chr5:147834400-147835200	Enhancers	HSMMtube	muscle
23	chr5:147834400-147835400	Weak transcription	Right Ventricle	heart
24	chr5:147834600-147836200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:147835000-147835800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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