Variant report

Variant	rs28617172
Chromosome Location	chr5:147835365-147835366
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147829020..147831724-chr5:147834010..147835785,2	K562	blood:
2	chr5:147828231..147830520-chr5:147834285..147837059,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10035818	0.89[EUR][1000 genomes]
rs10042369	0.82[EUR][1000 genomes]
rs10043775	0.82[EUR][1000 genomes]
rs10051223	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10055332	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10055430	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10056586	0.86[EUR][1000 genomes]
rs10079420	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11168046	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11168047	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1128450	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12513547	0.85[EUR][1000 genomes]
rs12717974	0.82[EUR][1000 genomes]
rs13174567	0.84[EUR][1000 genomes]
rs17720155	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17776882	0.89[EUR][1000 genomes]
rs17777066	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1971431	0.87[EUR][1000 genomes]
rs1984789	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2037997	0.95[EUR][1000 genomes]
rs2112761	0.86[EUR][1000 genomes]
rs34269182	0.86[EUR][1000 genomes]
rs3734120	0.86[EUR][1000 genomes]
rs3734121	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3925019	0.86[EUR][1000 genomes]
rs4274967	0.86[EUR][1000 genomes]
rs4274968	0.86[EUR][1000 genomes]
rs4472255	0.86[EUR][1000 genomes]
rs4574533	0.86[EUR][1000 genomes]
rs4599524	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4599526	0.86[EUR][1000 genomes]
rs4639213	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4705253	0.86[EUR][1000 genomes]
rs60625004	0.86[EUR][1000 genomes]
rs6861078	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6884076	0.86[EUR][1000 genomes]
rs7700502	0.82[EUR][1000 genomes]
rs7713927	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7727161	0.87[EUR][1000 genomes]
rs7727320	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7728004	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7733401	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7736019	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9325096	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9325097	0.86[EUR][1000 genomes]
rs9325098	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147808000-147835400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:147822400-147839200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:147831800-147837000	Enhancers	Fetal Heart	heart
4	chr5:147832400-147837000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:147833400-147835400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:147833400-147835600	Weak transcription	Right Atrium	heart
7	chr5:147833600-147836800	Enhancers	Brain Germinal Matrix	brain
8	chr5:147834200-147835600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:147834200-147835600	Enhancers	Left Ventricle	heart
10	chr5:147834400-147835400	Weak transcription	Right Ventricle	heart
11	chr5:147834600-147836200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:147835000-147835800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:147835200-147835600	Enhancers	Duodenum Mucosa	Duodenum
14	chr5:147835200-147836000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:147835200-147836400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:147835200-147836600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:147835200-147836600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:147835200-147836800	Weak transcription	H9 Cell Line	embryonic stem cell

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