Variant report

Variant	rs10061215
Chromosome Location	chr5:79505868-79505869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79505099..79507881-chr5:79550530..79552076,3	K562	blood:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10036776	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10039470	0.87[EUR][1000 genomes]
rs10055268	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13178249	0.81[EUR][1000 genomes]
rs13354808	0.82[AFR][1000 genomes]
rs13355674	0.87[EUR][1000 genomes]
rs13356941	0.84[EUR][1000 genomes]
rs16877612	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4235717	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4703805	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4704633	0.82[ASN][1000 genomes]
rs60316437	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60823172	0.86[EUR][1000 genomes]
rs66738727	0.81[ASN][1000 genomes]
rs6879270	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79490800-79513800	Weak transcription	Fetal Kidney	kidney
2	chr5:79492200-79506200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:79495200-79507800	Weak transcription	Right Ventricle	heart
4	chr5:79497000-79506800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr5:79497000-79508800	Enhancers	Brain Substantia Nigra	brain
6	chr5:79497400-79515000	Weak transcription	Esophagus	oesophagus
7	chr5:79497800-79508400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:79498600-79520800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:79498600-79521200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:79498800-79509800	Enhancers	Brain Hippocampus Middle	brain
11	chr5:79498800-79514000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:79499000-79506600	Weak transcription	Lung	lung
13	chr5:79499000-79507800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr5:79499000-79509200	Weak transcription	Spleen	Spleen
15	chr5:79499000-79513200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr5:79499000-79517800	Weak transcription	Aorta	Aorta
17	chr5:79499400-79507000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:79500000-79509200	Weak transcription	Fetal Muscle Leg	muscle
19	chr5:79500000-79509400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:79500000-79537600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr5:79500200-79506200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr5:79500200-79512000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr5:79500400-79506800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr5:79500400-79508200	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr5:79500400-79510400	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr5:79501000-79506400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr5:79501000-79506800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr5:79501000-79508000	Enhancers	Brain Anterior Caudate	brain
29	chr5:79501000-79509200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:79501000-79510600	Enhancers	Primary T cells fromperipheralblood	blood
31	chr5:79501000-79512000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr5:79501000-79513200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr5:79501200-79506400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr5:79501200-79506600	Weak transcription	Gastric	stomach
35	chr5:79501200-79507800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr5:79501200-79508400	Enhancers	Brain Cingulate Gyrus	brain
37	chr5:79501400-79506200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr5:79501400-79506200	Enhancers	HepG2	liver
39	chr5:79501400-79507000	Weak transcription	Small Intestine	intestine
40	chr5:79501400-79507600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:79501400-79507600	Weak transcription	Colonic Mucosa	Colon
42	chr5:79501400-79507800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr5:79501400-79509200	Weak transcription	Primary B cells from cord blood	blood
44	chr5:79501400-79509200	Weak transcription	Right Atrium	heart
45	chr5:79501400-79509400	Weak transcription	NHEK	skin
46	chr5:79501400-79515000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr5:79501600-79513200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr5:79501600-79516800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr5:79502000-79516200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr5:79502200-79508000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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