Variant report

Variant	rs13178249
Chromosome Location	chr5:79524946-79524947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79524007..79525802-chr5:79528033..79529597,2	MCF-7	breast:
2	chr5:79524008..79526229-chr5:79530708..79532211,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10036776	0.87[EUR][1000 genomes]
rs10039470	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10061215	0.81[EUR][1000 genomes]
rs12522787	0.95[ASN][1000 genomes]
rs13355674	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13356941	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16877613	0.89[ASN][1000 genomes]
rs35839767	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4703805	0.80[EUR][1000 genomes]
rs60316437	0.80[EUR][1000 genomes]
rs60823172	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7718066	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79500000-79537600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:79509600-79525600	Weak transcription	Spleen	Spleen
3	chr5:79509800-79535600	Weak transcription	Primary B cells from cord blood	blood
4	chr5:79512000-79534000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr5:79513600-79525400	Weak transcription	Adipose Nuclei	Adipose
6	chr5:79513800-79525200	Weak transcription	Osteobl	bone
7	chr5:79513800-79527800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr5:79514200-79525600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:79515400-79525200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:79515400-79525800	Weak transcription	Esophagus	oesophagus
11	chr5:79515600-79525400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:79515600-79525400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:79515600-79525600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:79515600-79525600	Weak transcription	Ovary	ovary
15	chr5:79515600-79525600	Weak transcription	Right Atrium	heart
16	chr5:79515600-79534400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:79515800-79525400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:79515800-79527000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:79516600-79526400	Weak transcription	Small Intestine	intestine
20	chr5:79516800-79525200	Weak transcription	Fetal Lung	lung
21	chr5:79516800-79525600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:79516800-79525600	Weak transcription	Brain Angular Gyrus	brain
23	chr5:79516800-79525600	Weak transcription	Colonic Mucosa	Colon
24	chr5:79516800-79525600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr5:79516800-79534400	Weak transcription	Right Ventricle	heart
26	chr5:79517000-79525400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:79517000-79525600	Weak transcription	Gastric	stomach
28	chr5:79517000-79525800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:79517000-79525800	Weak transcription	Placenta	Placenta
30	chr5:79517000-79525800	Weak transcription	Lung	lung
31	chr5:79517000-79526800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr5:79517000-79530000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr5:79517000-79532000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr5:79517000-79534200	Weak transcription	Fetal Stomach	stomach
35	chr5:79517000-79534800	Weak transcription	Dnd41	blood
36	chr5:79517000-79536400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr5:79517000-79536600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr5:79517200-79525800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr5:79517200-79533200	Weak transcription	Fetal Muscle Leg	muscle
40	chr5:79517400-79525000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr5:79517400-79525400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr5:79517400-79525800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr5:79517800-79525400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr5:79518000-79525600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr5:79518200-79525600	Weak transcription	Brain Hippocampus Middle	brain
46	chr5:79520400-79531000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr5:79521200-79532600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr5:79521400-79525200	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr5:79521400-79526600	Enhancers	Primary T cells fromperipheralblood	blood
50	chr5:79521400-79536200	Enhancers	Primary T helper cells fromperipheralblood	blood

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