Variant report

Variant	rs13356941
Chromosome Location	chr5:79518441-79518442
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79514935..79516719-chr5:79517338..79519015,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10036776	0.86[EUR][1000 genomes]
rs10039470	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10061215	0.84[EUR][1000 genomes]
rs13178249	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13355674	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16877613	0.88[ASN][1000 genomes]
rs35839767	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4703805	0.83[EUR][1000 genomes]
rs60316437	0.83[EUR][1000 genomes]
rs60823172	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7718066	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79498600-79520800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:79498600-79521200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:79500000-79537600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:79509600-79525600	Weak transcription	Spleen	Spleen
5	chr5:79509800-79535600	Weak transcription	Primary B cells from cord blood	blood
6	chr5:79512000-79534000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:79513400-79519600	Weak transcription	HMEC	breast
8	chr5:79513600-79525400	Weak transcription	Adipose Nuclei	Adipose
9	chr5:79513800-79525200	Weak transcription	Osteobl	bone
10	chr5:79513800-79527800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr5:79514000-79524200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:79514200-79520000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:79514200-79525600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:79515400-79518800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
15	chr5:79515400-79525200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:79515400-79525800	Weak transcription	Esophagus	oesophagus
17	chr5:79515600-79521200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr5:79515600-79525400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr5:79515600-79525400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr5:79515600-79525600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:79515600-79525600	Weak transcription	Ovary	ovary
22	chr5:79515600-79525600	Weak transcription	Right Atrium	heart
23	chr5:79515600-79534400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:79515800-79525400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:79515800-79527000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr5:79516000-79519000	Genic enhancers	Primary T cells fromperipheralblood	blood
27	chr5:79516600-79526400	Weak transcription	Small Intestine	intestine
28	chr5:79516800-79518600	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr5:79516800-79519800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr5:79516800-79521200	Weak transcription	Brain Substantia Nigra	brain
31	chr5:79516800-79521200	Weak transcription	Pancreas	Pancrea
32	chr5:79516800-79523000	Weak transcription	HepG2	liver
33	chr5:79516800-79524200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr5:79516800-79525200	Weak transcription	Fetal Lung	lung
35	chr5:79516800-79525600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr5:79516800-79525600	Weak transcription	Brain Angular Gyrus	brain
37	chr5:79516800-79525600	Weak transcription	Colonic Mucosa	Colon
38	chr5:79516800-79525600	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr5:79516800-79534400	Weak transcription	Right Ventricle	heart
40	chr5:79517000-79519200	Enhancers	Brain Germinal Matrix	brain
41	chr5:79517000-79519200	Strong transcription	Fetal Intestine Small	intestine
42	chr5:79517000-79519600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr5:79517000-79520200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr5:79517000-79521200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr5:79517000-79521200	Weak transcription	Stomach Mucosa	stomach
46	chr5:79517000-79521400	Weak transcription	Brain Anterior Caudate	brain
47	chr5:79517000-79521400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr5:79517000-79521800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr5:79517000-79523200	Weak transcription	Left Ventricle	heart
50	chr5:79517000-79523400	Weak transcription	Fetal Intestine Large	intestine

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