Variant report

Variant	rs10061402
Chromosome Location	chr5:94905967-94905968
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10036798	1.00[AFR][1000 genomes]
rs10057055	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10068869	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs10072001	1.00[YRI][hapmap]
rs10476655	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12332119	1.00[YRI][hapmap]
rs13360797	0.88[AFR][1000 genomes]
rs2560259	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs28644427	1.00[AFR][1000 genomes]
rs60589016	1.00[AFR][1000 genomes]
rs73147921	0.88[AFR][1000 genomes]
rs73147923	0.88[AFR][1000 genomes]
rs73147944	1.00[AFR][1000 genomes]
rs73147946	1.00[AFR][1000 genomes]
rs73147947	1.00[AFR][1000 genomes]
rs73147958	1.00[AFR][1000 genomes]
rs73147962	1.00[AFR][1000 genomes]
rs73147963	1.00[AFR][1000 genomes]
rs9314149	1.00[AFR][1000 genomes]
rs9314150	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830408	chr5:94894032-94915995	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94892000-94906200	Weak transcription	Brain Hippocampus Middle	brain
2	chr5:94892200-94906000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:94892200-94906800	Weak transcription	Fetal Kidney	kidney
4	chr5:94892200-94907200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:94892200-94907400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:94892200-94934400	Weak transcription	Fetal Stomach	stomach
7	chr5:94892200-94936600	Weak transcription	Fetal Lung	lung
8	chr5:94892400-94906000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:94892400-94906600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:94892400-94907600	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:94892400-94908800	Weak transcription	HepG2	liver
12	chr5:94892400-94910200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr5:94892400-94911200	Weak transcription	HMEC	breast
14	chr5:94892400-94921000	Weak transcription	Psoas Muscle	Psoas
15	chr5:94892400-94922400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr5:94892400-94926000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:94892400-94926200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:94892400-94926200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:94892400-94926200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:94892400-94926600	Weak transcription	NH-A	brain
21	chr5:94892400-94937200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr5:94892600-94907800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:94894000-94908400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:94894000-94919000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr5:94898200-94926000	Weak transcription	Thymus	Thymus
26	chr5:94898400-94906600	Weak transcription	Brain Angular Gyrus	brain
27	chr5:94900200-94908000	Weak transcription	Placenta	Placenta
28	chr5:94900400-94910200	Weak transcription	Spleen	Spleen
29	chr5:94900400-94942400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:94900600-94906400	Weak transcription	Fetal Muscle Leg	muscle
31	chr5:94900600-94913200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:94900600-94919600	Weak transcription	K562	blood
33	chr5:94900600-94921200	Weak transcription	Pancreas	Pancrea
34	chr5:94901000-94916400	Weak transcription	Fetal Brain Male	brain
35	chr5:94901400-94906200	Strong transcription	Primary T cells from cord blood	blood
36	chr5:94901400-94910200	Weak transcription	HSMM	muscle
37	chr5:94901600-94926400	Weak transcription	HUVEC	blood vessel
38	chr5:94901800-94909600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:94902000-94925800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr5:94902000-94936600	Weak transcription	HSMMtube	muscle
41	chr5:94902200-94906400	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr5:94902400-94906200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr5:94902600-94906400	Strong transcription	Primary B cells from cord blood	blood
44	chr5:94902800-94906200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr5:94903000-94906200	Strong transcription	Fetal Thymus	thymus
46	chr5:94903200-94911800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr5:94903600-94908000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr5:94903600-94909400	Weak transcription	NHLF	lung
49	chr5:94903600-94925800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:94903800-94910000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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