Variant report

Variant	rs10476655
Chromosome Location	chr5:94876576-94876577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10036798	1.00[AFR][1000 genomes]
rs10057055	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10061402	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10068869	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs10072001	1.00[YRI][hapmap]
rs12332119	1.00[YRI][hapmap]
rs13360797	0.88[AFR][1000 genomes]
rs2560259	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs28644427	1.00[AFR][1000 genomes]
rs60589016	1.00[AFR][1000 genomes]
rs73147921	0.88[AFR][1000 genomes]
rs73147923	0.88[AFR][1000 genomes]
rs73147944	1.00[AFR][1000 genomes]
rs73147946	1.00[AFR][1000 genomes]
rs73147947	1.00[AFR][1000 genomes]
rs73147958	1.00[AFR][1000 genomes]
rs73147962	1.00[AFR][1000 genomes]
rs73147963	1.00[AFR][1000 genomes]
rs9314149	1.00[AFR][1000 genomes]
rs9314150	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9314151	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94818000-94882400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:94825000-94886200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:94825400-94886400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr5:94826000-94886400	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:94826800-94886400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:94828800-94885800	Strong transcription	Fetal Thymus	thymus
9	chr5:94835200-94881000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:94841400-94883400	Strong transcription	Primary B cells from cord blood	blood
11	chr5:94841800-94886000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr5:94842000-94884800	Strong transcription	Dnd41	blood
13	chr5:94842200-94882000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:94842200-94886000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr5:94845600-94879800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:94846600-94881000	Weak transcription	Gastric	stomach
17	chr5:94847400-94890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:94849200-94890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:94849800-94878200	Weak transcription	Fetal Intestine Small	intestine
20	chr5:94849800-94879800	Weak transcription	Fetal Stomach	stomach
21	chr5:94849800-94881400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr5:94850600-94879200	Weak transcription	Small Intestine	intestine
23	chr5:94851800-94881200	Weak transcription	Right Ventricle	heart
24	chr5:94853800-94879800	Weak transcription	Lung	lung
25	chr5:94853800-94880400	Weak transcription	Pancreas	Pancrea
26	chr5:94853800-94890000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr5:94855800-94878400	Strong transcription	Liver	Liver
28	chr5:94857600-94884800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr5:94864400-94889400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr5:94865200-94880200	Weak transcription	Spleen	Spleen
31	chr5:94865200-94889400	Weak transcription	Esophagus	oesophagus
32	chr5:94865200-94890000	Weak transcription	Aorta	Aorta
33	chr5:94866000-94880200	Weak transcription	Colon Smooth Muscle	Colon
34	chr5:94866400-94880200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:94866600-94881000	Weak transcription	NHEK	skin
36	chr5:94867400-94880800	Weak transcription	Fetal Heart	heart
37	chr5:94867400-94886000	Strong transcription	Adipose Nuclei	Adipose
38	chr5:94867600-94879200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:94868000-94878000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr5:94868400-94879200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:94868800-94886000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:94869400-94883000	Strong transcription	Primary hematopoietic stem cells	blood
43	chr5:94869400-94889000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:94869600-94878400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr5:94869600-94883200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr5:94869800-94881400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr5:94870000-94877600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr5:94870000-94883000	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr5:94870000-94886200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:94870200-94876600	Strong transcription	Primary T cells from cord blood	blood

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