Variant report

Variant	rs10057055
Chromosome Location	chr5:94854020-94854021
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94853908..94855767-chr5:94886325..94888751,2	K562	blood:

Variant related genes	Relation type
ENSG00000198677	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10036798	0.88[AFR][1000 genomes]
rs10061402	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10068869	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10072001	1.00[YRI][hapmap]
rs10476655	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12332119	1.00[YRI][hapmap]
rs13360797	1.00[AFR][1000 genomes]
rs2560259	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs28644427	0.88[AFR][1000 genomes]
rs60589016	0.88[AFR][1000 genomes]
rs73147909	0.81[AFR][1000 genomes]
rs73147921	1.00[AFR][1000 genomes]
rs73147923	1.00[AFR][1000 genomes]
rs73147944	0.88[AFR][1000 genomes]
rs73147946	0.88[AFR][1000 genomes]
rs73147947	0.88[AFR][1000 genomes]
rs73147958	0.88[AFR][1000 genomes]
rs73147962	0.88[AFR][1000 genomes]
rs73147963	0.88[AFR][1000 genomes]
rs9314149	0.88[AFR][1000 genomes]
rs9314150	1.00[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv598954	chr5:94783175-94859599	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94817400-94865600	Strong transcription	Osteobl	bone
3	chr5:94818000-94882400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:94824400-94862200	Weak transcription	Colonic Mucosa	Colon
5	chr5:94824800-94866000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:94825000-94886200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:94825200-94866000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:94825400-94886400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:94826000-94886400	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr5:94826800-94886400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr5:94827200-94865600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:94827200-94866800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:94828600-94873600	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr5:94828800-94862600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:94828800-94885800	Strong transcription	Fetal Thymus	thymus
17	chr5:94829200-94866200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:94831400-94868400	Strong transcription	Fetal Intestine Large	intestine
19	chr5:94831600-94856200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:94835200-94864800	Weak transcription	Spleen	Spleen
21	chr5:94835200-94881000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:94835400-94868000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:94836200-94866400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:94836600-94860800	Strong transcription	Placenta	Placenta
25	chr5:94836600-94861000	Strong transcription	Duodenum Mucosa	Duodenum
26	chr5:94836600-94867600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:94837000-94866600	Strong transcription	Adipose Nuclei	Adipose
28	chr5:94837400-94856200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr5:94841400-94855800	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:94841400-94883400	Strong transcription	Primary B cells from cord blood	blood
31	chr5:94841600-94867600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:94841800-94886000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr5:94842000-94854800	Strong transcription	GM12878-XiMat	blood
34	chr5:94842000-94858200	Strong transcription	Fetal Lung	lung
35	chr5:94842000-94866000	Strong transcription	NH-A	brain
36	chr5:94842000-94873600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr5:94842000-94884800	Strong transcription	Dnd41	blood
38	chr5:94842200-94854600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:94842200-94859000	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr5:94842200-94882000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr5:94842200-94886000	Strong transcription	Primary B cells from peripheral blood	blood
42	chr5:94843600-94859000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr5:94843800-94870200	Strong transcription	HUVEC	blood vessel
44	chr5:94844000-94855200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr5:94844800-94855000	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr5:94844800-94855800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr5:94844800-94858800	Strong transcription	Colon Smooth Muscle	Colon
48	chr5:94845200-94864200	Weak transcription	Aorta	Aorta
49	chr5:94845400-94854600	Strong transcription	Liver	Liver
50	chr5:94845400-94861600	Strong transcription	HUES48 Cell Line	embryonic stem cell

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