Variant report

Variant	rs10062218
Chromosome Location	chr5:128014196-128014197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10040118	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10044764	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10051549	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10053477	0.87[ASN][1000 genomes]
rs10064348	0.85[ASN][1000 genomes]
rs10070510	0.85[ASN][1000 genomes]
rs10073583	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10073602	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10077056	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10477688	0.82[ASN][1000 genomes]
rs10478817	0.87[ASN][1000 genomes]
rs10520005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12386502	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12515907	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13361872	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1579297	0.90[EUR][1000 genomes]
rs28468674	0.85[EUR][1000 genomes]
rs4355567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4371806	0.85[EUR][1000 genomes]
rs4382207	0.87[ASN][1000 genomes]
rs4836388	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs56119036	0.87[ASN][1000 genomes]
rs56270098	0.85[ASN][1000 genomes]
rs59001046	0.91[ASN][1000 genomes]
rs6870036	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73784408	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73787636	0.85[EUR][1000 genomes]
rs7729188	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9327481	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9327482	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9327483	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9885266	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427734	chr5:127805281-128088632	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830484	chr5:127936347-128087308	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1022886	chr5:128010041-128040856	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128007000-128018600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:128010400-128017600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:128010400-128017800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:128010600-128014400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:128010600-128016000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:128010800-128017600	Weak transcription	Fetal Lung	lung

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