Variant report

Variant	rs59001046
Chromosome Location	chr5:127961982-127961983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10040118	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10044764	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10051549	0.90[ASN][1000 genomes]
rs10053477	0.84[ASN][1000 genomes]
rs10062218	0.91[ASN][1000 genomes]
rs10062344	0.88[AFR][1000 genomes]
rs10064348	0.85[ASN][1000 genomes]
rs10070510	0.82[ASN][1000 genomes]
rs10073583	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10073602	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077056	0.94[ASN][1000 genomes]
rs10477688	0.88[ASN][1000 genomes]
rs10478817	0.84[ASN][1000 genomes]
rs10520005	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12386502	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12515907	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1579297	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28468674	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4314459	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4355567	0.94[ASN][1000 genomes]
rs4371806	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4382207	0.84[ASN][1000 genomes]
rs55735252	0.83[AFR][1000 genomes]
rs56119036	0.84[ASN][1000 genomes]
rs56270098	0.85[ASN][1000 genomes]
rs6595841	0.88[AFR][1000 genomes]
rs6870036	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73784408	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73787627	0.85[AFR][1000 genomes]
rs73787636	0.94[EUR][1000 genomes]
rs7729188	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327481	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9327482	0.94[ASN][1000 genomes]
rs9327483	0.93[ASN][1000 genomes]
rs9885266	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531991	chr5:127624564-127966085	Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv427734	chr5:127805281-128088632	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830484	chr5:127936347-128087308	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127960200-127964400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:127961400-127963800	Weak transcription	Fetal Stomach	stomach
3	chr5:127961600-127965000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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