Variant report

Variant	rs10073583
Chromosome Location	chr5:127935001-127935002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10040118	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10044764	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10051549	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10062218	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10062344	0.82[AFR][1000 genomes]
rs10063961	0.83[AFR][1000 genomes]
rs10073602	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10077056	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10520005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12386502	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12515907	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13361872	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1579297	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17164094	0.94[CHD][hapmap]
rs17164113	0.94[CHD][hapmap]
rs17164127	0.94[CHD][hapmap]
rs17839642	0.94[CHD][hapmap]
rs28468674	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3805652	0.88[CHD][hapmap]
rs4314459	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4355567	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4371806	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4836388	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs59001046	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6595831	0.94[CHD][hapmap]
rs6595836	0.94[CHD][hapmap]
rs6595837	0.94[CHD][hapmap]
rs6595841	0.82[AFR][1000 genomes]
rs6595842	0.83[AFR][1000 genomes]
rs6864057	0.94[CHD][hapmap]
rs6870036	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73784408	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73787636	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7708713	0.94[CHD][hapmap]
rs7722917	0.94[CHD][hapmap]
rs7729188	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9327478	0.94[CHD][hapmap]
rs9327481	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9327482	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9327483	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9885266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531991	chr5:127624564-127966085	Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv427734	chr5:127805281-128088632	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127935000-127935200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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