Variant report

Variant	rs10062241
Chromosome Location	chr5:101838049-101838050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10035158	0.83[EUR][1000 genomes]
rs10035511	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs10040591	0.80[EUR][1000 genomes]
rs10041015	1.00[CHB][hapmap]
rs10041536	0.81[CHB][hapmap]
rs10041652	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10043147	0.80[EUR][1000 genomes]
rs10044561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10052881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10054879	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10055840	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10059044	0.81[EUR][1000 genomes]
rs10062073	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10063981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10067699	0.80[EUR][1000 genomes]
rs10067911	0.86[EUR][1000 genomes]
rs10072508	0.88[EUR][1000 genomes]
rs10072703	0.87[EUR][1000 genomes]
rs10073892	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10074590	0.81[CHB][hapmap]
rs10440756	0.83[EUR][1000 genomes]
rs10440757	0.83[EUR][1000 genomes]
rs10440758	0.83[EUR][1000 genomes]
rs10477820	0.80[EUR][1000 genomes]
rs10477821	0.80[EUR][1000 genomes]
rs10479214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10479218	0.85[ASN][1000 genomes]
rs10479239	0.80[EUR][1000 genomes]
rs10479240	0.80[EUR][1000 genomes]
rs10515327	0.80[EUR][1000 genomes]
rs11745781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11746498	0.80[EUR][1000 genomes]
rs12332575	0.90[EUR][1000 genomes]
rs12653822	0.88[EUR][1000 genomes]
rs12655805	0.83[EUR][1000 genomes]
rs13168111	0.80[EUR][1000 genomes]
rs13355922	0.82[EUR][1000 genomes]
rs1376899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1502840	0.86[EUR][1000 genomes]
rs17334032	0.88[EUR][1000 genomes]
rs17334060	0.80[EUR][1000 genomes]
rs1901513	1.00[CHB][hapmap]
rs1901514	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1901515	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs1901519	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1910288	0.86[EUR][1000 genomes]
rs1910290	0.85[EUR][1000 genomes]
rs2400806	0.86[EUR][1000 genomes]
rs28490970	0.80[EUR][1000 genomes]
rs28786103	0.86[AMR][1000 genomes]
rs34877854	0.87[EUR][1000 genomes]
rs35369487	0.80[EUR][1000 genomes]
rs35664711	0.80[EUR][1000 genomes]
rs55897698	0.82[EUR][1000 genomes]
rs56076606	0.82[EUR][1000 genomes]
rs56170429	0.80[EUR][1000 genomes]
rs56256048	0.86[EUR][1000 genomes]
rs60284576	0.80[EUR][1000 genomes]
rs61522296	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62369688	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62369689	0.88[EUR][1000 genomes]
rs62369727	0.83[EUR][1000 genomes]
rs62369729	0.83[EUR][1000 genomes]
rs6596505	0.80[EUR][1000 genomes]
rs6596506	0.80[EUR][1000 genomes]
rs6860730	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs6864567	0.80[EUR][1000 genomes]
rs6881472	1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs7356787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7708617	0.80[EUR][1000 genomes]
rs7729674	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs924679	0.88[EUR][1000 genomes]
rs9327861	0.88[EUR][1000 genomes]
rs9327868	0.80[EUR][1000 genomes]
rs9885011	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1029894	chr5:101620079-102516827	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv830427	chr5:101651510-101849723	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1030022	chr5:101764756-101852804	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv830428	chr5:101797242-101958791	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1022583	chr5:101829366-101899242	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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