Variant report

Variant	rs7356787
Chromosome Location	chr5:101806886-101806887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10041015	1.00[CHB][hapmap]
rs10041536	0.81[CHB][hapmap]
rs10041652	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[MKK][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10044561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10052669	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs10052881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10054879	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10055840	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap]
rs10062073	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10062241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10063981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10067911	0.83[EUR][1000 genomes]
rs10072508	0.85[EUR][1000 genomes]
rs10072703	0.84[EUR][1000 genomes]
rs10073892	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap]
rs10074590	0.81[CHB][hapmap]
rs10078945	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10479190	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs10479214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10479218	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10479239	0.97[TSI][hapmap]
rs11745781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12332575	0.86[EUR][1000 genomes]
rs12653822	0.85[EUR][1000 genomes]
rs13355136	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1376899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1502840	0.83[EUR][1000 genomes]
rs17334032	0.85[EUR][1000 genomes]
rs1901513	1.00[CHB][hapmap]
rs1901514	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1901515	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1901519	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap]
rs1910288	0.83[EUR][1000 genomes]
rs1910290	0.82[EUR][1000 genomes]
rs2400806	0.83[EUR][1000 genomes]
rs28786103	0.92[AMR][1000 genomes]
rs34877854	0.84[EUR][1000 genomes]
rs56256048	0.83[EUR][1000 genomes]
rs61522296	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62369688	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62369689	0.85[EUR][1000 genomes]
rs6860730	1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs6881472	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs6884301	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs6892179	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs7729674	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs924679	0.85[EUR][1000 genomes]
rs9327814	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9327821	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.91[TSI][hapmap]
rs9327861	0.85[EUR][1000 genomes]
rs9885011	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1029894	chr5:101620079-102516827	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv830427	chr5:101651510-101849723	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv882511	chr5:101669015-101819981	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv882515	chr5:101672238-101816104	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv882516	chr5:101672238-101819981	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1030022	chr5:101764756-101852804	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv534123	chr5:101794089-101834242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv830428	chr5:101797242-101958791	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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