Variant report

Variant	rs10052669
Chromosome Location	chr5:101622966-101622967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10038081	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10038372	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10040933	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10041015	0.92[CHB][hapmap]
rs10041652	0.92[CHB][hapmap]
rs10044561	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs10045752	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10052881	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs10054879	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs10055641	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10055840	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs10057361	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10059790	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10062073	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs10063351	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10063981	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs10066445	0.85[ASN][1000 genomes]
rs10067051	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10070402	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10072122	0.80[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10072167	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10073892	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs10074392	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10078945	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10479190	0.92[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10479214	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs11745781	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs11746537	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13355136	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13356480	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13357585	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13357610	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13359098	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1376899	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs1376901	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17271947	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1823691	0.85[EUR][1000 genomes]
rs1823692	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1901513	0.93[CHB][hapmap]
rs1901514	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs1901515	0.92[CHB][hapmap]
rs1901519	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs2123131	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2123132	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28469696	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28481357	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28602449	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28864102	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5012584	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57977588	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59648644	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59723886	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59934563	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60647834	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61335461	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62372160	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62372161	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62372163	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62372166	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62372213	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62372214	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62372234	0.85[ASN][1000 genomes]
rs62372301	0.85[ASN][1000 genomes]
rs6866041	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6881472	0.93[CHB][hapmap]
rs6884301	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs6892179	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72777945	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72777964	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7356787	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs9327814	0.93[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9327815	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9327821	0.90[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9327823	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9327824	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9327825	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022551	chr5:101366177-101649643	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv882505	chr5:101397849-101652251	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028787	chr5:101432086-101718569	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv522882	chr5:101596633-101782930	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1029894	chr5:101620079-102516827	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101606400-101624400	Weak transcription	Liver	Liver
2	chr5:101613400-101624400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr5:101613400-101629400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:101614400-101624400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:101618000-101623000	Enhancers	Primary hematopoietic stem cells	blood
6	chr5:101618600-101624400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:101619200-101630800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:101619600-101624400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr5:101620600-101623200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr5:101620600-101630600	Weak transcription	GM12878-XiMat	blood
11	chr5:101621200-101624000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:101621600-101623600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:101622800-101623000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:101622800-101623600	Enhancers	Primary B cells from cord blood	blood
15	chr5:101622800-101624400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr5:101622800-101630200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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