Variant report

Variant	rs6884301
Chromosome Location	chr5:101615705-101615706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10038081	0.82[EUR][1000 genomes]
rs10038372	0.82[EUR][1000 genomes]
rs10040933	0.83[EUR][1000 genomes]
rs10041015	0.92[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs10044561	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs10045752	0.82[EUR][1000 genomes]
rs10052669	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs10052881	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs10054879	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs10055641	0.82[EUR][1000 genomes]
rs10055840	0.88[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap]
rs10057361	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10059790	0.82[EUR][1000 genomes]
rs10062073	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs10063002	0.87[AMR][1000 genomes]
rs10063351	0.82[EUR][1000 genomes]
rs10063981	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs10067051	0.82[EUR][1000 genomes]
rs10070402	0.82[EUR][1000 genomes]
rs10072122	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10073892	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs10077220	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10078945	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10214232	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10479190	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs10479214	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs11745781	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs13355136	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs13357340	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13357585	0.82[EUR][1000 genomes]
rs13357610	0.82[EUR][1000 genomes]
rs13358420	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13358421	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13358882	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13359098	0.82[EUR][1000 genomes]
rs13359604	0.87[AMR][1000 genomes]
rs13360644	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1349589	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1376899	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs1376901	0.82[EUR][1000 genomes]
rs1584714	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1584715	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17271947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1823691	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1901513	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs1901514	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs1901515	0.92[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap]
rs1901519	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs2123131	0.82[EUR][1000 genomes]
rs2123132	0.82[EUR][1000 genomes]
rs2218926	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28421510	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28481357	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28602449	0.82[ASN][1000 genomes]
rs28625937	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28864102	0.82[ASN][1000 genomes]
rs2895807	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs5012584	0.82[EUR][1000 genomes]
rs59648644	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59723886	0.82[EUR][1000 genomes]
rs59934563	0.82[EUR][1000 genomes]
rs61335461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62372160	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62372161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62372163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62372166	0.82[EUR][1000 genomes]
rs62372213	0.82[EUR][1000 genomes]
rs62372215	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62372216	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62372217	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62372218	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62372219	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62372220	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62372221	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62372222	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62372298	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6866041	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6892179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895186	0.84[ASN][1000 genomes]
rs72777964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7356787	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs7445156	0.87[AMR][1000 genomes]
rs9327814	0.93[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9327815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9327821	0.83[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs9327823	0.82[EUR][1000 genomes]
rs9327824	0.82[EUR][1000 genomes]
rs9327825	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022551	chr5:101366177-101649643	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv882505	chr5:101397849-101652251	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028787	chr5:101432086-101718569	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv522882	chr5:101596633-101782930	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3385694	chr5:101599102-101620704	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101606400-101624400	Weak transcription	Liver	Liver
2	chr5:101612200-101616000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:101613400-101624400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:101613400-101629400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:101614000-101618800	Weak transcription	Primary T cells from cord blood	blood
6	chr5:101614400-101618000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:101614400-101618200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:101614400-101624400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:101614800-101618600	Weak transcription	Primary B cells from cord blood	blood
10	chr5:101615400-101615800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:101615600-101615800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr5:101615600-101616400	Weak transcription	Primary monocytes fromperipheralblood	blood

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