Variant report

Variant	rs6881472
Chromosome Location	chr5:101817994-101817995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10041015	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10041536	0.81[CHB][hapmap]
rs10041652	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs10044561	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10052669	0.93[CHB][hapmap]
rs10052881	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10054879	1.00[CHB][hapmap]
rs10055840	1.00[CHB][hapmap]
rs10062073	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10062241	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10063981	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10073892	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10074590	0.81[CHB][hapmap]
rs10078945	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs10479190	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10479214	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11745781	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1376899	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1901513	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1901514	1.00[CHB][hapmap]
rs1901515	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1901519	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs61522296	0.81[ASN][1000 genomes]
rs62369688	0.81[ASN][1000 genomes]
rs6860730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6883528	0.96[YRI][hapmap]
rs6892179	0.93[CHB][hapmap]
rs6898458	0.96[YRI][hapmap]
rs7356787	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7729674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9327821	1.00[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1029894	chr5:101620079-102516827	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv830427	chr5:101651510-101849723	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv882511	chr5:101669015-101819981	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv882516	chr5:101672238-101819981	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1030022	chr5:101764756-101852804	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv534123	chr5:101794089-101834242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv830428	chr5:101797242-101958791	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101816000-101819200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:101817000-101819000	Weak transcription	Osteobl	bone
3	chr5:101817600-101819200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:101817600-101819400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:101817800-101818800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links