Variant report

Variant	rs57977588
Chromosome Location	chr5:101634545-101634546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:101634495-101634545	GM19239	blood:	n/a
2	chr5:101634495-101634545	NB4	blood:	n/a
3	chr5:101634495-101634545	AG10803	skin:	n/a
4	chr5:101634495-101634545	HCF	heart:	n/a
5	chr5:101634495-101634545	RPTEC	kidney:	n/a
6	chr5:101634495-101634545	HCPEpiC	choroid plexus:	n/a
7	chr5:101634495-101634545	SK-N-MC	brain:	n/a
8	chr5:101634495-101634545	NH-A	brain:	n/a
9	chr5:101634495-101634545	NHBE	bronchial:	n/a
10	chr5:101634495-101634545	HAEpiC	amniotic membrane:	n/a
11	chr5:101634495-101634545	U87	brain:	n/a
12	chr5:101634495-101634545	Jurkat	blood:	n/a
13	chr5:101634495-101634545	HPAEpiC	pulmonary alveolar:	n/a
14	chr5:101634495-101634545	ovcar-3	ovarian:	n/a
15	chr5:101634495-101634545	HRE	kidney:	n/a
16	chr5:101634495-101634545	SAEC	small airway:	n/a
17	chr5:101634495-101634545	MCF10A-Er-Src	breast:	n/a
18	chr5:101634495-101634545	NHDF-neo	bronchial:	n/a
19	chr5:101634495-101634545	H1-hESC	embryonic stem cell:	embryo
20	chr5:101634495-101634545	HEK293	kidney:	embryo
21	chr5:101634495-101634545	HNPCEpiC	eye:	n/a
22	chr5:101634495-101634545	BJ	skin:	n/a
23	chr5:101634495-101634545	HCM	heart:	n/a
24	chr5:101634495-101634545	BE2_C	brain:	n/a
25	chr5:101634495-101634545	Caco-2	colon:	n/a
26	chr5:101634495-101634545	SKMC	muscle:	n/a
27	chr5:101634495-101634545	HCT-116	colon:	n/a
28	chr5:101634495-101634545	IMR90	lung:	fetal
29	chr5:101634495-101634545	GM12891	blood:	n/a
30	chr5:101634495-101634545	PFSK-1	brain:	n/a
31	chr5:101634495-101634545	K562	blood:	n/a
32	chr5:101634495-101634545	AG09319	gingival:	n/a
33	chr5:101634495-101634545	GM12878	blood:	n/a
34	chr5:101634495-101634545	PrEC	prostate:	n/a
35	chr5:101634495-101634545	GM06990	blood:	n/a
36	chr5:101634495-101634545	HIPEpiC	eye:	n/a
37	chr5:101634495-101634545	AG09309	skin:	n/a
38	chr5:101634495-101634545	AG04450	lung:	fetal
39	chr5:101634495-101634545	A549	lung:	n/a
40	chr5:101634495-101634545	HRPEpiC	eye:	n/a
41	chr5:101634495-101634545	AoSMC	blood vessel:	n/a
42	chr5:101634495-101634545	MCF-7	breast:	n/a
43	chr5:101634495-101634545	HRCEpiC	kidney:	n/a
44	chr5:101634495-101634545	GM12892	blood:	n/a
45	chr5:101634495-101634545	ProgFib	skin:	n/a
46	chr5:101634495-101634545	Hepatocyte	liver:	n/a
47	chr5:101634495-101634545	Hela-S3	cervix:	n/a
48	chr5:101634495-101634545	HMEC	breast:	n/a
49	chr5:101634495-101634545	HEEpiC	esophagus:	n/a
50	chr5:101634495-101634545	NT2-D1	testis:	n/a

No data

Variant related genes	Relation type
RN7SKP68	CpG island
SLCO4C1	CpG island

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10038081	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10038372	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040933	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10045752	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10052669	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10055641	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057361	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10059790	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10063002	0.82[EUR][1000 genomes]
rs10063351	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10066445	0.90[ASN][1000 genomes]
rs10067051	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070402	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072122	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10072167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074392	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10077220	0.82[EUR][1000 genomes]
rs10078945	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10214232	0.82[EUR][1000 genomes]
rs10479190	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746537	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13355136	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13356480	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13357340	0.82[EUR][1000 genomes]
rs13357585	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13357610	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13358420	0.82[EUR][1000 genomes]
rs13358421	0.82[EUR][1000 genomes]
rs13358882	0.81[EUR][1000 genomes]
rs13359098	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359604	0.82[EUR][1000 genomes]
rs13360644	0.82[EUR][1000 genomes]
rs1376901	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584714	0.81[EUR][1000 genomes]
rs1584715	0.81[EUR][1000 genomes]
rs17271947	0.81[ASN][1000 genomes]
rs1823691	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1823692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123131	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123132	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218926	0.82[EUR][1000 genomes]
rs28421510	0.82[EUR][1000 genomes]
rs28469696	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28481357	0.81[ASN][1000 genomes]
rs28602449	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28625937	0.82[EUR][1000 genomes]
rs28864102	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2895807	0.82[EUR][1000 genomes]
rs5012584	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59648644	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59723886	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59934563	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60647834	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61335461	0.81[ASN][1000 genomes]
rs62372160	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62372161	0.81[ASN][1000 genomes]
rs62372163	0.81[ASN][1000 genomes]
rs62372166	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62372213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62372214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62372215	0.82[EUR][1000 genomes]
rs62372216	0.82[EUR][1000 genomes]
rs62372217	0.82[EUR][1000 genomes]
rs62372218	0.82[EUR][1000 genomes]
rs62372219	0.82[EUR][1000 genomes]
rs62372220	0.82[EUR][1000 genomes]
rs62372221	0.82[EUR][1000 genomes]
rs62372222	0.82[EUR][1000 genomes]
rs62372234	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62372301	0.90[ASN][1000 genomes]
rs6866041	0.81[ASN][1000 genomes]
rs6892179	0.81[ASN][1000 genomes]
rs72777945	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72777964	0.81[ASN][1000 genomes]
rs7445156	0.82[EUR][1000 genomes]
rs9327814	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9327815	0.81[ASN][1000 genomes]
rs9327821	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327823	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327824	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327825	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022551	chr5:101366177-101649643	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv882505	chr5:101397849-101652251	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028787	chr5:101432086-101718569	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv522882	chr5:101596633-101782930	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1029894	chr5:101620079-102516827	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
9	nsv462324	chr5:101633610-101729504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv599189	chr5:101633610-101729504	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1015892	chr5:101633610-101730439	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101632600-101649200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:101633200-101635000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr5:101634200-101635000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:101634400-101634800	Flanking Active TSS	Liver	Liver
5	chr5:101634400-101635000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links