Variant report

Variant	rs10074392
Chromosome Location	chr5:101596412-101596413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10038081	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10038372	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10039511	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10040933	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10045752	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10052669	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10054879	0.82[JPT][hapmap]
rs10055641	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10055840	0.85[MEX][hapmap]
rs10057361	0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10059790	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10063002	0.81[EUR][1000 genomes]
rs10063351	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10067051	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10070402	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10072122	0.83[CEU][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10072167	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10073892	1.00[ASW][hapmap];0.85[TSI][hapmap]
rs10077220	0.81[EUR][1000 genomes]
rs10078945	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10214232	0.81[EUR][1000 genomes]
rs10479190	1.00[ASW][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11746537	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13355136	0.83[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13356480	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13357340	0.81[EUR][1000 genomes]
rs13357585	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13357610	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13358420	0.81[EUR][1000 genomes]
rs13358421	0.81[EUR][1000 genomes]
rs13358882	0.81[EUR][1000 genomes]
rs13359098	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13359604	0.81[EUR][1000 genomes]
rs13360644	0.81[EUR][1000 genomes]
rs1376901	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1584714	0.80[EUR][1000 genomes]
rs1584715	0.80[EUR][1000 genomes]
rs1823692	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1901519	1.00[ASW][hapmap];0.85[TSI][hapmap]
rs2123131	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2123132	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2218926	0.81[EUR][1000 genomes]
rs28421510	0.81[EUR][1000 genomes]
rs28469696	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28602449	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28625937	0.81[EUR][1000 genomes]
rs28864102	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2895807	0.81[EUR][1000 genomes]
rs5012584	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57977588	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59648644	0.90[AMR][1000 genomes]
rs59723886	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59934563	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60647834	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62372160	0.88[AMR][1000 genomes]
rs62372166	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62372213	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62372214	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62372215	0.81[EUR][1000 genomes]
rs62372216	0.81[EUR][1000 genomes]
rs62372217	0.81[EUR][1000 genomes]
rs62372218	0.81[EUR][1000 genomes]
rs62372219	0.81[EUR][1000 genomes]
rs62372220	0.81[EUR][1000 genomes]
rs62372221	0.81[EUR][1000 genomes]
rs62372222	0.81[EUR][1000 genomes]
rs62372234	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72777945	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7445156	0.81[EUR][1000 genomes]
rs9327814	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9327821	1.00[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9327823	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9327824	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9327825	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022551	chr5:101366177-101649643	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv882505	chr5:101397849-101652251	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028787	chr5:101432086-101718569	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	esv3333528	chr5:101595103-101597301	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101568200-101599000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:101568800-101598200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:101570200-101599600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:101578200-101598200	Weak transcription	Pancreas	Pancrea
5	chr5:101579200-101598200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:101579800-101598600	Weak transcription	Lung	lung
7	chr5:101580000-101604400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:101585600-101598800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:101589000-101600000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:101589800-101600000	Weak transcription	Fetal Intestine Small	intestine
11	chr5:101591800-101605800	Weak transcription	Liver	Liver
12	chr5:101596000-101598000	Weak transcription	Primary monocytes fromperipheralblood	blood

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