Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10520950	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10520951	0.89[JPT][hapmap]
rs12651967	0.83[ASN][1000 genomes]
rs12654016	0.81[ASN][1000 genomes]
rs12656237	0.83[ASN][1000 genomes]
rs12657245	0.81[ASN][1000 genomes]
rs12657687	0.89[ASN][1000 genomes]
rs12658382	0.83[ASN][1000 genomes]
rs12659873	0.85[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs16899404	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs16899677	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57047163	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57353106	0.81[ASN][1000 genomes]
rs73077041	0.81[ASN][1000 genomes]
rs73077048	0.81[ASN][1000 genomes]
rs73077049	0.81[ASN][1000 genomes]
rs73077055	0.81[ASN][1000 genomes]
rs73077059	0.85[ASN][1000 genomes]
rs73077061	0.83[ASN][1000 genomes]
rs73077062	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1018779	chr5:29861138-29937229	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1029641	chr5:29861138-29940871	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29887800-29889800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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