Variant report

Variant	rs12659873
Chromosome Location	chr5:29850134-29850135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:29850093-29850158	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000249744	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10062554	0.89[ASN][1000 genomes]
rs10520950	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10520951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12651967	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12653072	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12653144	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12653695	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12653753	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12654016	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12655866	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12656237	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12657245	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12657687	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657802	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12658382	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16899404	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16899409	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16899677	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs57047163	0.89[ASN][1000 genomes]
rs57074187	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57158757	0.87[EUR][1000 genomes]
rs57353106	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58810615	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59348224	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60844216	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6450724	0.80[ASN][1000 genomes]
rs6889054	0.82[ASN][1000 genomes]
rs73076353	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73076357	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73076370	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73076380	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73077041	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73077048	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73077049	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73077055	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73077059	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73077061	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73077062	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7701940	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7705429	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9686757	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9687994	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29850000-29850200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:29850000-29850200	ZNF genes & repeats	Aorta	Aorta

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