Variant report

Variant	rs10062933
Chromosome Location	chr5:63252935-63252936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10042486	0.93[EUR][1000 genomes]
rs1423691	0.96[EUR][1000 genomes]
rs358524	0.87[EUR][1000 genomes]
rs358526	0.91[EUR][1000 genomes]
rs358527	0.90[EUR][1000 genomes]
rs358528	0.94[EUR][1000 genomes]
rs378864	0.81[EUR][1000 genomes]
rs421321	0.81[EUR][1000 genomes]
rs428731	0.81[EUR][1000 genomes]
rs6295	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6449693	0.95[EUR][1000 genomes]
rs6878612	0.94[EUR][1000 genomes]
rs749099	0.96[EUR][1000 genomes]
rs7715837	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs878567	0.95[EUR][1000 genomes]
rs970453	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598351	chr5:63124140-63751144	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:63251000-63253200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:63251600-63254000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:63252400-63253400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr5:63252400-63254000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:63252600-63253200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:63252600-63254000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:63252600-63254000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:63252600-63254000	Active TSS	Fetal Brain Female	brain
9	chr5:63252800-63253200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:63252800-63254800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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