Variant report

Variant	rs7715837
Chromosome Location	chr5:63279906-63279907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10042486	0.96[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.95[EUR][1000 genomes]
rs10062933	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1423691	0.94[EUR][1000 genomes]
rs358524	0.85[EUR][1000 genomes]
rs358526	0.89[EUR][1000 genomes]
rs358527	0.88[EUR][1000 genomes]
rs358528	0.92[EUR][1000 genomes]
rs378864	0.83[EUR][1000 genomes]
rs421321	0.83[EUR][1000 genomes]
rs428731	0.83[EUR][1000 genomes]
rs6295	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6449693	0.96[EUR][1000 genomes]
rs6878612	0.96[CEU][hapmap];0.81[GIH][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.96[EUR][1000 genomes]
rs749099	0.95[EUR][1000 genomes]
rs878567	0.96[EUR][1000 genomes]
rs970453	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598351	chr5:63124140-63751144	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7715837	RNF180	cis	cerebellum	SCAN
rs7715837	RGS7BP	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:63279600-63281600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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