Variant report

Variant	rs428731
Chromosome Location	chr5:63298778-63298779
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10042486	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10062933	0.81[EUR][1000 genomes]
rs1423691	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs358528	0.82[EUR][1000 genomes]
rs378864	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421321	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6295	0.85[EUR][1000 genomes]
rs6449693	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6878612	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7448318	0.85[ASN][1000 genomes]
rs749099	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7715837	0.83[EUR][1000 genomes]
rs878567	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs970453	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598351	chr5:63124140-63751144	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:63298600-63299600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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