Variant report

Variant	rs10065576
Chromosome Location	chr5:167363383-167363384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10075943	0.90[YRI][hapmap]
rs6871739	0.89[AMR][1000 genomes]
rs73372743	1.00[AMR][1000 genomes]
rs7735238	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9942389	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167352000-167364400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167361200-167364600	Active TSS	Right Atrium	heart
3	chr5:167361600-167366800	Weak transcription	NH-A	brain
4	chr5:167361600-167371200	Weak transcription	NHEK	skin
5	chr5:167361800-167365000	Active TSS	Left Ventricle	heart
6	chr5:167361800-167366800	Active TSS	Right Ventricle	heart
7	chr5:167362200-167364600	Weak transcription	Aorta	Aorta
8	chr5:167362200-167370000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:167362400-167363800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167362400-167363800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:167362400-167364400	Weak transcription	HSMM	muscle
12	chr5:167362400-167364800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr5:167362400-167367200	Weak transcription	HMEC	breast
14	chr5:167362600-167369600	Weak transcription	Fetal Heart	heart
15	chr5:167362600-167370000	Weak transcription	HSMMtube	muscle
16	chr5:167362800-167365200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:167363000-167366200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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