Variant report

Variant	rs10075943
Chromosome Location	chr5:167359074-167359075
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10038819	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10065576	0.90[YRI][hapmap]
rs1421977	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35278978	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56738437	0.93[AFR][1000 genomes]
rs7724997	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7730283	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7735238	0.90[YRI][hapmap]
rs9942389	1.00[YRI][hapmap];0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167344200-167360600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167348000-167360600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:167351800-167360600	Weak transcription	NHEK	skin
4	chr5:167352000-167360600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:167352000-167364400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:167353000-167359800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:167355200-167361800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:167358000-167361200	Weak transcription	Right Atrium	heart
9	chr5:167358600-167359200	Enhancers	Fetal Heart	heart
10	chr5:167358800-167360200	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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