Variant report

Variant	rs1421977
Chromosome Location	chr5:167348852-167348853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10038819	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10075943	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35278978	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7724997	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7730283	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167344200-167349000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:167344200-167360600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167346000-167351400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:167346400-167349000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167346400-167351600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:167346400-167354800	Weak transcription	HSMM	muscle
7	chr5:167347000-167349800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:167347200-167349800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:167347200-167351200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:167347800-167349400	Weak transcription	NHEK	skin
11	chr5:167348000-167349000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:167348000-167360600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:167348800-167349000	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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