Variant report

Variant	rs35278978
Chromosome Location	chr5:167365966-167365967
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10038819	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10075943	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1421977	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56738437	0.95[AFR][1000 genomes]
rs7724997	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7730283	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9942389	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167361600-167366800	Weak transcription	NH-A	brain
2	chr5:167361600-167371200	Weak transcription	NHEK	skin
3	chr5:167361800-167366800	Active TSS	Right Ventricle	heart
4	chr5:167362200-167370000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:167362400-167367200	Weak transcription	HMEC	breast
6	chr5:167362600-167369600	Weak transcription	Fetal Heart	heart
7	chr5:167362600-167370000	Weak transcription	HSMMtube	muscle
8	chr5:167363000-167366200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167363800-167372600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:167364400-167376400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:167364600-167372800	Weak transcription	Right Atrium	heart
12	chr5:167364800-167366200	Weak transcription	Fetal Brain Male	brain
13	chr5:167364800-167366800	Weak transcription	Osteobl	bone
14	chr5:167365000-167366000	Weak transcription	Left Ventricle	heart
15	chr5:167365000-167369200	Weak transcription	HSMM	muscle
16	chr5:167365200-167366200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:167365200-167366600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:167365200-167371000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:167365400-167366600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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