Variant report

Variant	rs7735238
Chromosome Location	chr5:167371407-167371408
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10065576	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10075943	0.90[YRI][hapmap]
rs6871739	0.89[AMR][1000 genomes]
rs73372743	1.00[AMR][1000 genomes]
rs9942389	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167363800-167372600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167364400-167376400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:167364600-167372800	Weak transcription	Right Atrium	heart
4	chr5:167367200-167377600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167367600-167378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:167367800-167372600	Weak transcription	Right Ventricle	heart
7	chr5:167369000-167372800	Weak transcription	Left Ventricle	heart
8	chr5:167369200-167378200	Enhancers	HSMM	muscle
9	chr5:167369600-167375400	Enhancers	Fetal Heart	heart
10	chr5:167369800-167374600	Enhancers	NH-A	brain
11	chr5:167370000-167372400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:167370000-167372600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:167370000-167377400	Enhancers	HSMMtube	muscle
14	chr5:167370000-167378200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:167370200-167374600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:167370600-167374000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:167370800-167371800	Enhancers	Ovary	ovary
18	chr5:167370800-167372800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:167371000-167371800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:167371000-167371800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:167371000-167372600	Enhancers	HMEC	breast
22	chr5:167371000-167372800	Enhancers	Hela-S3	cervix
23	chr5:167371200-167371600	Enhancers	Fetal Lung	lung
24	chr5:167371200-167372200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:167371200-167372600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr5:167371200-167373400	Enhancers	NHEK	skin
27	chr5:167371200-167374800	Enhancers	Osteobl	bone
28	chr5:167371400-167372800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:167371400-167374800	Enhancers	Fetal Muscle Leg	muscle
30	chr5:167371400-167375000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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