Variant report

Variant	rs10069435
Chromosome Location	chr5:178376225-178376226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10042386	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10069181	0.91[ASN][1000 genomes]
rs10070619	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17664029	0.81[ASN][1000 genomes]
rs28728129	0.86[ASN][1000 genomes]
rs9329060	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178368800-178377000	Weak transcription	Psoas Muscle	Psoas
2	chr5:178369000-178378400	Weak transcription	NHDF-Ad	bronchial
3	chr5:178369000-178378800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:178369000-178380200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:178369000-178384800	ZNF genes & repeats	Fetal Stomach	stomach
6	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
7	chr5:178369600-178377400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr5:178370000-178378400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:178371200-178379200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr5:178371800-178378000	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr5:178372400-178376400	ZNF genes & repeats	Pancreas	Pancrea
12	chr5:178372600-178377400	Weak transcription	Fetal Heart	heart
13	chr5:178373200-178385800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:178373600-178377200	Strong transcription	Brain Germinal Matrix	brain
15	chr5:178374600-178376600	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:178374600-178376800	Weak transcription	Brain Substantia Nigra	brain
17	chr5:178374600-178380400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:178374800-178376800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:178374800-178377000	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:178374800-178377200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:178374800-178378600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:178374800-178380000	Weak transcription	Brain Angular Gyrus	brain
23	chr5:178375600-178376400	Strong transcription	Pancreatic Islets	Pancreatic Islet
24	chr5:178375600-178376800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr5:178375600-178377000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:178375600-178377000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:178375600-178377000	Weak transcription	Fetal Brain Male	brain
28	chr5:178375600-178377200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:178375600-178378400	Weak transcription	Brain Anterior Caudate	brain
30	chr5:178375600-178381600	Weak transcription	Right Ventricle	heart
31	chr5:178375600-178381800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:178375600-178385800	Weak transcription	Osteobl	bone
33	chr5:178375800-178377000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr5:178375800-178377000	Weak transcription	Fetal Kidney	kidney
35	chr5:178375800-178377000	Weak transcription	Fetal Lung	lung
36	chr5:178375800-178377000	Weak transcription	Ovary	ovary
37	chr5:178375800-178377200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:178375800-178377200	Weak transcription	Left Ventricle	heart
39	chr5:178375800-178379800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr5:178375800-178381800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr5:178376000-178376800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr5:178376000-178377000	Weak transcription	HSMMtube	muscle
43	chr5:178376000-178377800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
44	chr5:178376000-178378800	ZNF genes & repeats	Fetal Muscle Leg	muscle
45	chr5:178376200-178376600	Strong transcription	Placenta	Placenta
46	chr5:178376200-178377600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland

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