Variant report

Variant	rs1007419
Chromosome Location	chr6:62980430-62980431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10223780	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10455666	0.95[EUR][1000 genomes]
rs10806583	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1328890	0.90[EUR][1000 genomes]
rs1401352	0.90[EUR][1000 genomes]
rs1518908	0.92[EUR][1000 genomes]
rs1518909	0.90[EUR][1000 genomes]
rs1518911	0.89[EUR][1000 genomes]
rs1518912	0.89[EUR][1000 genomes]
rs1518916	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1577316	0.82[EUR][1000 genomes]
rs1610006	0.91[EUR][1000 genomes]
rs1974087	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2049007	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2176609	0.89[EUR][1000 genomes]
rs2260393	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2261485	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2492801	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2492803	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2492811	0.82[EUR][1000 genomes]
rs2639404	0.82[EUR][1000 genomes]
rs2639418	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2639420	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2639437	0.80[EUR][1000 genomes]
rs2639438	0.81[EUR][1000 genomes]
rs2814661	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2814662	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2814663	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2814668	0.82[EUR][1000 genomes]
rs2814669	0.82[EUR][1000 genomes]
rs2814679	0.82[EUR][1000 genomes]
rs2814682	0.82[EUR][1000 genomes]
rs2814694	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2842795	0.85[ASN][1000 genomes]
rs2842800	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2842804	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2842806	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3842920	0.85[EUR][1000 genomes]
rs3842921	0.85[EUR][1000 genomes]
rs3842922	0.85[EUR][1000 genomes]
rs3846821	0.85[EUR][1000 genomes]
rs3846822	0.85[EUR][1000 genomes]
rs3904141	0.83[EUR][1000 genomes]
rs3904142	0.82[EUR][1000 genomes]
rs3914604	0.85[EUR][1000 genomes]
rs4487565	0.89[EUR][1000 genomes]
rs4621622	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4710674	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs582021	0.82[EUR][1000 genomes]
rs599057	0.82[EUR][1000 genomes]
rs615127	0.81[EUR][1000 genomes]
rs616890	0.82[EUR][1000 genomes]
rs628999	0.82[EUR][1000 genomes]
rs629951	0.82[EUR][1000 genomes]
rs632625	0.82[EUR][1000 genomes]
rs641938	0.82[EUR][1000 genomes]
rs6455255	0.89[EUR][1000 genomes]
rs659539	0.82[EUR][1000 genomes]
rs661154	0.82[EUR][1000 genomes]
rs674219	0.82[EUR][1000 genomes]
rs675437	0.82[EUR][1000 genomes]
rs6902086	0.90[EUR][1000 genomes]
rs6912667	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6915599	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6921170	0.95[EUR][1000 genomes]
rs6922243	0.90[EUR][1000 genomes]
rs6929099	0.84[EUR][1000 genomes]
rs6939991	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs765219	0.90[EUR][1000 genomes]
rs7743234	0.89[EUR][1000 genomes]
rs7744422	0.93[EUR][1000 genomes]
rs7750316	0.90[EUR][1000 genomes]
rs7758662	0.85[EUR][1000 genomes]
rs7766919	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7769826	0.90[EUR][1000 genomes]
rs9342665	0.84[EUR][1000 genomes]
rs9346035	0.85[EUR][1000 genomes]
rs9346109	0.89[EUR][1000 genomes]
rs9346193	0.93[EUR][1000 genomes]
rs9346218	0.95[EUR][1000 genomes]
rs9346303	0.84[AFR][1000 genomes]
rs9346433	0.82[EUR][1000 genomes]
rs9346434	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9346435	0.82[EUR][1000 genomes]
rs9351718	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9354733	0.93[EUR][1000 genomes]
rs9354767	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9354781	0.95[EUR][1000 genomes]
rs9354861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9363771	0.84[EUR][1000 genomes]
rs9363792	0.84[EUR][1000 genomes]
rs9364088	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs989138	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017249	chr6:62906813-63317382	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020677	chr6:62911584-63309663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532025	chr6:62944349-63571677	Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv916760	chr6:62944661-63290986	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1034520	chr6:62967960-63057406	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62944000-62988200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:62976400-62994400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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