Variant report

Variant	rs2842795
Chromosome Location	chr6:63079272-63079273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1007419	0.85[ASN][1000 genomes]
rs1577316	0.86[ASN][1000 genomes]
rs2049007	0.82[ASN][1000 genomes]
rs2260393	0.94[ASN][1000 genomes]
rs2261485	0.96[ASN][1000 genomes]
rs2492801	0.94[ASN][1000 genomes]
rs2492803	0.94[ASN][1000 genomes]
rs2492811	0.87[ASN][1000 genomes]
rs2639404	0.87[ASN][1000 genomes]
rs2639418	0.96[ASN][1000 genomes]
rs2639420	0.96[ASN][1000 genomes]
rs2639437	0.88[ASN][1000 genomes]
rs2639438	0.88[ASN][1000 genomes]
rs2814661	0.96[ASN][1000 genomes]
rs2814662	0.96[ASN][1000 genomes]
rs2814663	0.96[ASN][1000 genomes]
rs2814668	0.87[ASN][1000 genomes]
rs2814669	0.87[ASN][1000 genomes]
rs2814679	0.88[ASN][1000 genomes]
rs2814682	0.87[ASN][1000 genomes]
rs2814694	0.95[ASN][1000 genomes]
rs2842800	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2842804	0.99[ASN][1000 genomes]
rs2842806	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4621622	0.95[ASN][1000 genomes]
rs582021	0.87[ASN][1000 genomes]
rs599057	0.87[ASN][1000 genomes]
rs615127	0.87[ASN][1000 genomes]
rs616890	0.87[ASN][1000 genomes]
rs628999	0.87[ASN][1000 genomes]
rs629951	0.87[ASN][1000 genomes]
rs632625	0.87[ASN][1000 genomes]
rs641938	0.85[ASN][1000 genomes]
rs659539	0.87[ASN][1000 genomes]
rs661154	0.87[ASN][1000 genomes]
rs674219	0.87[ASN][1000 genomes]
rs675437	0.87[ASN][1000 genomes]
rs678838	0.82[CHB][hapmap]
rs6915599	0.83[ASN][1000 genomes]
rs7766919	0.94[ASN][1000 genomes]
rs9346433	0.87[ASN][1000 genomes]
rs9346434	0.87[ASN][1000 genomes]
rs9346435	0.87[ASN][1000 genomes]
rs9354861	0.85[ASN][1000 genomes]
rs9364088	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017249	chr6:62906813-63317382	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020677	chr6:62911584-63309663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532025	chr6:62944349-63571677	Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv916760	chr6:62944661-63290986	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029503	chr6:63033365-63698355	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv603350	chr6:63066240-63152724	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv462967	chr6:63069063-63173293	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv603351	chr6:63069063-63173293	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63066600-63081600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:63078600-63081400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:63079000-63083400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:63079200-63079600	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links