Variant report

Variant	rs2049007
Chromosome Location	chr6:62923825-62923826
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1007419	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10223780	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10455666	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10806583	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1328890	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1401352	0.92[EUR][1000 genomes]
rs1518908	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1518909	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1518911	0.91[EUR][1000 genomes]
rs1518912	0.91[EUR][1000 genomes]
rs1518916	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1610006	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1974087	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2176609	0.91[EUR][1000 genomes]
rs2261485	0.81[ASN][1000 genomes]
rs2639418	0.81[ASN][1000 genomes]
rs2639420	0.81[ASN][1000 genomes]
rs2814661	0.81[ASN][1000 genomes]
rs2814662	0.81[ASN][1000 genomes]
rs2814663	0.81[ASN][1000 genomes]
rs2814694	0.80[ASN][1000 genomes]
rs2842795	0.82[ASN][1000 genomes]
rs2842800	0.82[ASN][1000 genomes]
rs2842804	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2842806	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3842920	0.87[EUR][1000 genomes]
rs3842921	0.87[EUR][1000 genomes]
rs3842922	0.87[EUR][1000 genomes]
rs3846820	0.86[EUR][1000 genomes]
rs3846821	0.87[EUR][1000 genomes]
rs3846822	0.87[EUR][1000 genomes]
rs3904141	0.85[EUR][1000 genomes]
rs3904142	0.84[EUR][1000 genomes]
rs3914604	0.87[EUR][1000 genomes]
rs4487565	0.91[EUR][1000 genomes]
rs4621622	0.80[ASN][1000 genomes]
rs4710674	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6455255	0.91[EUR][1000 genomes]
rs6902086	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6912667	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6915599	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6921170	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6922243	0.92[EUR][1000 genomes]
rs6929099	0.86[EUR][1000 genomes]
rs6939991	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs765219	0.92[EUR][1000 genomes]
rs7743234	0.91[EUR][1000 genomes]
rs7744422	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7750316	0.92[EUR][1000 genomes]
rs7758662	0.88[EUR][1000 genomes]
rs7769826	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9342665	0.86[EUR][1000 genomes]
rs9346035	0.87[EUR][1000 genomes]
rs9346109	0.91[EUR][1000 genomes]
rs9346193	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9346218	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9351718	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9354733	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9354767	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9354781	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9354861	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9363771	0.86[EUR][1000 genomes]
rs9363792	0.86[EUR][1000 genomes]
rs9364088	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs989138	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916376	chr6:61967253-62927185	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv603316	chr6:62600980-62927514	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv538268	chr6:62900450-62928906	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv1017249	chr6:62906813-63317382	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1020677	chr6:62911584-63309663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv603318	chr6:62923203-62928237	Flanking Active TSS Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv603319	chr6:62923203-62928521	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62921600-62929600	Weak transcription	Primary B cells from cord blood	blood

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