Variant report

Variant	rs10074992
Chromosome Location	chr5:113510922-113510923
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10039340	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043160	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10061904	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10076063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13359151	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28706196	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28773853	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56373356	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60553494	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73254131	0.83[AMR][1000 genomes]
rs73779718	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779735	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73779738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779740	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779741	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779742	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2763899	chr5:113474771-113533857	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599432	chr5:113486177-113561766	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv521754	chr5:113507154-113515807	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113505600-113511800	Weak transcription	Fetal Heart	heart
2	chr5:113510000-113512600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:113510000-113512800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:113510000-113514800	Weak transcription	Left Ventricle	heart
5	chr5:113510200-113512200	Enhancers	NH-A	brain
6	chr5:113510200-113512600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:113510200-113512600	Enhancers	NHEK	skin
8	chr5:113510200-113512800	Enhancers	HUVEC	blood vessel
9	chr5:113510400-113511000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:113510600-113512200	Enhancers	HMEC	breast
11	chr5:113510800-113514000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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