Variant report

Variant	rs73779740
Chromosome Location	chr5:113520167-113520168
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10039340	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043160	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055733	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10061904	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10074992	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10076063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13359151	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28706196	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28773853	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56373356	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60553494	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73254131	0.83[AMR][1000 genomes]
rs73779718	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779735	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73779738	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779741	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2763899	chr5:113474771-113533857	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599432	chr5:113486177-113561766	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv965569	chr5:113515560-113527423	Weak transcription Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113515200-113521000	Weak transcription	Left Ventricle	heart
2	chr5:113519400-113520200	Enhancers	HUVEC	blood vessel
3	chr5:113519400-113521200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:113519600-113521000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:113519600-113521600	Enhancers	Fetal Heart	heart
6	chr5:113519800-113521000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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