Variant report

Variant	rs10076737
Chromosome Location	chr5:79846926-79846927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79844936..79847062-chr5:79859363..79861060,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10054911	0.88[AMR][1000 genomes]
rs10070571	0.88[AMR][1000 genomes]
rs10474629	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes]
rs168940	1.00[CEU][hapmap]
rs171595	1.00[CEU][hapmap]
rs171596	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs173599	1.00[CEU][hapmap]
rs174076	1.00[CEU][hapmap]
rs2251759	1.00[CEU][hapmap]
rs248999	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs249003	1.00[MEX][hapmap]
rs249006	1.00[CEU][hapmap]
rs249016	1.00[CEU][hapmap]
rs249023	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs249030	0.86[TSI][hapmap]
rs249038	0.81[GIH][hapmap];0.86[TSI][hapmap]
rs2544591	1.00[CEU][hapmap]
rs259023	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs259024	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs259027	1.00[CEU][hapmap]
rs259028	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs259029	1.00[MEX][hapmap]
rs259030	1.00[CEU][hapmap]
rs259037	1.00[CEU][hapmap]
rs259038	1.00[CEU][hapmap]
rs259042	1.00[CEU][hapmap]
rs259044	1.00[CEU][hapmap]
rs259045	1.00[CEU][hapmap]
rs259047	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs259048	1.00[CEU][hapmap]
rs259051	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs259052	1.00[CEU][hapmap]
rs259053	1.00[CEU][hapmap]
rs259054	1.00[CEU][hapmap]
rs557346	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs59548552	0.88[AMR][1000 genomes]
rs6881788	0.81[AMR][1000 genomes]
rs6898411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs856765	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027183	chr5:79837249-79876229	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1021286	chr5:79844255-79876229	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1025796	chr5:79844255-79880441	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1034832	chr5:79844255-79892075	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1034384	chr5:79846926-79876229	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79845600-79850400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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