Variant report

Variant	rs10474629
Chromosome Location	chr5:79822916-79822917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79816742..79818882-chr5:79821411..79823624,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10054911	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10070571	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076737	0.88[AMR][1000 genomes]
rs10474628	0.82[AFR][1000 genomes]
rs168940	1.00[CEU][hapmap]
rs171595	1.00[CEU][hapmap]
rs171596	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs173599	1.00[CEU][hapmap]
rs174076	1.00[CEU][hapmap]
rs2251759	1.00[CEU][hapmap]
rs248999	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs249003	1.00[MEX][hapmap]
rs249006	1.00[CEU][hapmap]
rs249016	1.00[CEU][hapmap]
rs249023	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs249030	0.93[TSI][hapmap]
rs249038	0.93[TSI][hapmap]
rs2544591	1.00[CEU][hapmap]
rs259023	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs259024	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs259027	1.00[CEU][hapmap]
rs259028	1.00[CEU][hapmap]
rs259029	1.00[MEX][hapmap]
rs259030	1.00[CEU][hapmap]
rs259037	1.00[CEU][hapmap]
rs259038	1.00[CEU][hapmap]
rs259042	1.00[CEU][hapmap]
rs259044	1.00[CEU][hapmap]
rs259045	1.00[CEU][hapmap]
rs259047	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs259048	1.00[CEU][hapmap]
rs259051	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs259052	1.00[CEU][hapmap]
rs259053	1.00[CEU][hapmap]
rs259054	1.00[CEU][hapmap]
rs557346	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs59548552	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881788	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6896128	0.91[YRI][hapmap]
rs6898411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856765	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028027	chr5:79694699-79841752	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79800000-79825600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:79800600-79825200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:79801400-79825400	Weak transcription	Pancreas	Pancrea
4	chr5:79805200-79824200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr5:79806200-79825600	Weak transcription	HSMMtube	muscle
6	chr5:79807400-79825600	Weak transcription	Osteobl	bone
7	chr5:79808600-79824400	Weak transcription	Fetal Lung	lung
8	chr5:79810400-79825600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:79813200-79824000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:79817200-79824600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr5:79818200-79823000	Weak transcription	Placenta	Placenta
12	chr5:79818600-79823400	Weak transcription	Ovary	ovary
13	chr5:79819400-79824200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:79819400-79825000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:79821600-79823400	Weak transcription	Adipose Nuclei	Adipose
16	chr5:79822200-79823000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr5:79822800-79825800	Weak transcription	Liver	Liver

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