Variant report

Variant	rs10077172
Chromosome Location	chr5:59555514-59555515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10051717	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10059334	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10064516	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs10074696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[ASN][1000 genomes]
rs10471474	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10471475	0.80[YRI][hapmap]
rs12516794	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12520400	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12523473	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs4328990	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4404639	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4410606	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs4604150	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs4700370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[ASN][1000 genomes]
rs59518781	0.87[EUR][1000 genomes]
rs60399456	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62370659	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62371960	0.93[ASN][1000 genomes]
rs6862158	0.89[EUR][1000 genomes]
rs72755103	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7444733	0.85[CEU][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7714765	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs7728100	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9291685	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv4847	chr5:59523591-59569307	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv969227	chr5:59550035-59556265	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59554200-59557600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:59554200-59562400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr5:59554400-59561600	Weak transcription	HepG2	liver
4	chr5:59554800-59559600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:59555000-59556800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr5:59555000-59557200	Enhancers	Hela-S3	cervix
7	chr5:59555000-59558800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:59555200-59555800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr5:59555200-59556600	Enhancers	Primary hematopoietic stem cells	blood
10	chr5:59555200-59557600	Enhancers	Primary B cells from cord blood	blood
11	chr5:59555400-59555800	Enhancers	Aorta	Aorta
12	chr5:59555400-59556400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:59555400-59557000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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