Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10051717	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs10059334	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10074696	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs10077172	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs10471474	0.94[ASN][1000 genomes]
rs10471475	0.81[CEU][hapmap]
rs12516794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12520400	0.87[ASN][1000 genomes]
rs12523473	0.88[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4235479	0.92[GIH][hapmap];0.84[TSI][hapmap]
rs4328990	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs4404639	0.94[ASN][1000 genomes]
rs4700370	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[TSI][hapmap];0.94[ASN][1000 genomes]
rs60399456	0.97[ASN][1000 genomes]
rs62370659	0.94[ASN][1000 genomes]
rs62371960	0.90[ASN][1000 genomes]
rs6449459	0.92[GIH][hapmap];0.84[TSI][hapmap]
rs72755103	0.87[ASN][1000 genomes]
rs7710822	0.92[GIH][hapmap];0.82[TSI][hapmap]
rs7728100	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs9291685	0.92[GIH][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv4847	chr5:59523591-59569307	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59559600-59584800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59561600-59576600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:59565600-59569600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:59567400-59570000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:59567400-59581600	Weak transcription	Fetal Brain Male	brain
6	chr5:59568400-59569400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr5:59568400-59574800	Weak transcription	Aorta	Aorta

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