Variant report

Variant	rs10078205
Chromosome Location	chr5:151240394-151240395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10066206	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10066835	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10476775	0.83[AMR][1000 genomes]
rs10476777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28480497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73794390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7721901	1.00[AMR][1000 genomes]
rs9324713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808837	chr5:151238149-151260215	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151231200-151242800	Weak transcription	Aorta	Aorta
2	chr5:151235200-151264200	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links