The 2.0 version of rSNPBase

Variant report

Variant rs28480497
Chromosome Location chr5:151200034-151200035
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:151164000-151207600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr5:151171800-151205200 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr5:151179800-151208400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr5:151183600-151210600 Weak transcription Lung lung
5 chr5:151183800-151200200 Weak transcription Brain Cingulate Gyrus brain
6 chr5:151183800-151203000 Weak transcription Gastric stomach
7 chr5:151183800-151204400 Weak transcription Pancreas Pancrea
8 chr5:151183800-151206000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr5:151183800-151208400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr5:151183800-151209600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr5:151183800-151213400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr5:151184000-151200400 Weak transcription Brain Angular Gyrus brain
13 chr5:151188200-151210400 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr5:151190000-151204800 Weak transcription Fetal Stomach stomach
15 chr5:151190400-151210400 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr5:151192200-151208200 Weak transcription H9 Cell Line embryonic stem cell
17 chr5:151192400-151205200 Weak transcription ES-I3 Cell Line embryonic stem cell
18 chr5:151192400-151209800 Weak transcription Primary T regulatory cells fromperipheralblood blood
19 chr5:151192400-151210000 Weak transcription Aorta Aorta
20 chr5:151192400-151211200 Weak transcription NHLF lung
21 chr5:151192600-151205200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr5:151192600-151206000 Weak transcription Thymus Thymus
23 chr5:151192600-151206200 Weak transcription Psoas Muscle Psoas
24 chr5:151192600-151209800 Weak transcription Primary T helper cells PMA-I stimulated --
25 chr5:151192800-151204200 Weak transcription Fetal Kidney kidney
26 chr5:151192800-151205000 Weak transcription Duodenum Mucosa Duodenum
27 chr5:151192800-151205200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr5:151192800-151208400 Weak transcription H1 Cell Line embryonic stem cell
29 chr5:151192800-151209600 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr5:151192800-151209800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr5:151193000-151200200 Weak transcription Brain Hippocampus Middle brain
32 chr5:151193000-151204400 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr5:151193000-151205600 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr5:151193000-151207600 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr5:151193000-151210400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr5:151193200-151202400 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr5:151193200-151210600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr5:151193600-151211400 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr5:151194400-151207800 Weak transcription Primary B cells from cord blood blood
40 chr5:151194600-151203000 Weak transcription Fetal Muscle Trunk muscle
41 chr5:151194800-151203000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr5:151194800-151204800 Weak transcription Fetal Intestine Large intestine
43 chr5:151194800-151206000 Weak transcription Dnd41 blood
44 chr5:151194800-151206600 Weak transcription Placenta Placenta
45 chr5:151194800-151209000 Weak transcription Brain Anterior Caudate brain
46 chr5:151194800-151209600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
47 chr5:151194800-151210400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
48 chr5:151195000-151202200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr5:151195000-151205200 Weak transcription HUES6 Cell Line embryonic stem cell
50 chr5:151195200-151204000 Weak transcription HSMMtube muscle

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Last update: Aug 31, 2015