Variant report

Variant	rs10081080
Chromosome Location	chr6:57122467-57122468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57111234..57114004-chr6:57121619..57123505,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs106782	0.93[ASN][1000 genomes]
rs11751737	0.80[ASN][1000 genomes]
rs11752218	0.80[ASN][1000 genomes]
rs11752964	0.80[ASN][1000 genomes]
rs11758642	0.80[ASN][1000 genomes]
rs13193843	0.87[ASN][1000 genomes]
rs13194005	0.80[ASN][1000 genomes]
rs13194760	0.80[ASN][1000 genomes]
rs13195089	0.80[ASN][1000 genomes]
rs13196690	0.80[ASN][1000 genomes]
rs13197168	0.80[ASN][1000 genomes]
rs13197209	0.87[ASN][1000 genomes]
rs13197375	0.80[ASN][1000 genomes]
rs13202171	0.80[ASN][1000 genomes]
rs13210513	0.80[ASN][1000 genomes]
rs13210602	0.80[ASN][1000 genomes]
rs13210603	0.80[ASN][1000 genomes]
rs13213618	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219670	0.80[ASN][1000 genomes]
rs1330630	0.80[ASN][1000 genomes]
rs1330631	0.87[ASN][1000 genomes]
rs1330632	0.87[ASN][1000 genomes]
rs1330633	0.80[ASN][1000 genomes]
rs17683360	0.80[ASN][1000 genomes]
rs223292	0.93[ASN][1000 genomes]
rs223293	0.93[ASN][1000 genomes]
rs223295	0.93[ASN][1000 genomes]
rs34316771	0.93[ASN][1000 genomes]
rs35060539	0.80[ASN][1000 genomes]
rs380307	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901430	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6917004	0.87[ASN][1000 genomes]
rs6927231	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs704480	0.94[CEU][hapmap]
rs71564886	0.93[ASN][1000 genomes]
rs71566846	0.80[ASN][1000 genomes]
rs71566847	0.80[ASN][1000 genomes]
rs71566848	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1034095	chr6:57102042-57162808	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv528165	chr6:57104266-57130574	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57118400-57126600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:57118400-57128200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:57118800-57122800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:57120400-57122600	Enhancers	Colon Smooth Muscle	Colon
5	chr6:57121400-57122800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:57121400-57124200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:57121800-57123000	Enhancers	Placenta	Placenta
8	chr6:57122000-57122600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:57122400-57122600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:57122400-57122600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:57122400-57122600	Enhancers	Ovary	ovary
12	chr6:57122400-57122600	Flanking Active TSS	Rectal Smooth Muscle	rectum
13	chr6:57122400-57122800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:57122400-57122800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:57122400-57122800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:57122400-57122800	Enhancers	Adipose Nuclei	Adipose
17	chr6:57122400-57122800	Enhancers	Aorta	Aorta
18	chr6:57122400-57122800	Enhancers	HSMM	muscle
19	chr6:57122400-57122800	Enhancers	HSMMtube	muscle
20	chr6:57122400-57122800	Flanking Active TSS	NHDF-Ad	bronchial
21	chr6:57122400-57123000	Active TSS	Fetal Kidney	kidney
22	chr6:57122400-57123000	Enhancers	Fetal Muscle Leg	muscle
23	chr6:57122400-57123200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:57122400-57123200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:57122400-57123200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr6:57122400-57123200	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr6:57122400-57123200	Enhancers	NH-A	brain
28	chr6:57122400-57123200	Flanking Active TSS	NHLF	lung
29	chr6:57122400-57123200	Flanking Active TSS	Osteobl	bone
30	chr6:57122400-57123600	Enhancers	Fetal Stomach	stomach

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