Variant report

Variant	rs34316771
Chromosome Location	chr6:57126128-57126129
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:57117734..57121990-chr6:57123203..57126438,5	MCF-7	breast:
2	chr6:57125429..57127143-chr6:57128713..57131182,2	K562	blood:
3	chr6:57125298..57127143-chr6:57127818..57130213,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAB23-1	chr6:57125332-57126515	ENSG00000250335
2	lnc-RAB23-1	chr6:57125324-57126515	XLOC_005751
3	lnc-RAB23-1	chr6:57125322-57126515	NONHSAT113288

No data

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10081080	0.93[ASN][1000 genomes]
rs106782	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751737	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11752218	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11752964	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11758642	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13193843	0.80[ASN][1000 genomes]
rs13194005	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13194760	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13195089	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13196690	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13197168	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13197209	0.80[ASN][1000 genomes]
rs13197224	0.84[AMR][1000 genomes]
rs13197375	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13202171	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13210513	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13210602	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13210603	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13213618	0.93[ASN][1000 genomes]
rs13219670	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1330630	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1330631	0.80[ASN][1000 genomes]
rs1330632	0.80[ASN][1000 genomes]
rs1330633	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17683360	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs223292	1.00[ASN][1000 genomes]
rs223293	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs223295	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35060539	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs380307	0.93[ASN][1000 genomes]
rs6901430	0.80[ASN][1000 genomes]
rs6917004	0.80[ASN][1000 genomes]
rs6927231	0.93[ASN][1000 genomes]
rs71564886	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71566846	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71566847	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71566848	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1034095	chr6:57102042-57162808	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv528165	chr6:57104266-57130574	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57118400-57126600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:57118400-57128200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:57123000-57127200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:57123200-57126200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:57123200-57126400	Weak transcription	NHLF	lung
6	chr6:57123200-57126600	Weak transcription	Adipose Nuclei	Adipose
7	chr6:57123200-57126600	Weak transcription	HSMMtube	muscle
8	chr6:57123200-57126600	Weak transcription	NH-A	brain
9	chr6:57123200-57127200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:57123200-57127200	Enhancers	Osteobl	bone
11	chr6:57123400-57130200	Weak transcription	Fetal Brain Male	brain
12	chr6:57123600-57126400	Weak transcription	Fetal Stomach	stomach
13	chr6:57123800-57126400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:57123800-57126600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:57123800-57126800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:57123800-57130600	Enhancers	Colon Smooth Muscle	Colon
17	chr6:57124000-57126200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:57124000-57126600	Weak transcription	HSMM	muscle
19	chr6:57124200-57127200	Weak transcription	Aorta	Aorta
20	chr6:57124400-57126200	Weak transcription	NHDF-Ad	bronchial
21	chr6:57124400-57126400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:57124600-57127200	Weak transcription	Ovary	ovary
23	chr6:57124800-57126400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:57125200-57133200	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:57125600-57128800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:57126000-57126200	Enhancers	Stomach Smooth Muscle	stomach
27	chr6:57126000-57126800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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