Variant report

Variant	rs71564886
Chromosome Location	chr6:57131199-57131200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:57126469..57129335-chr6:57130714..57132915,2	MCF-7	breast:
2	chr6:57130908..57133107-chr6:57178261..57179805,2	MCF-7	breast:
3	chr6:57128467..57134592-chr6:57180122..57183939,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146143	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10081080	0.93[ASN][1000 genomes]
rs106782	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751737	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11752218	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11752964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11758642	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13193843	0.80[ASN][1000 genomes]
rs13194005	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13194760	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13195089	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13196690	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13197168	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13197209	0.80[ASN][1000 genomes]
rs13197224	0.84[AMR][1000 genomes]
rs13197375	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13202171	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13210513	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13210602	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13210603	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13213618	0.93[ASN][1000 genomes]
rs13219670	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1330630	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1330631	0.80[ASN][1000 genomes]
rs1330632	0.80[ASN][1000 genomes]
rs1330633	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17683360	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs223292	1.00[ASN][1000 genomes]
rs223293	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs223295	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34316771	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35060539	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs380307	0.93[ASN][1000 genomes]
rs6901430	0.80[ASN][1000 genomes]
rs6917004	0.80[ASN][1000 genomes]
rs6927231	0.93[ASN][1000 genomes]
rs71566846	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71566847	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71566848	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1034095	chr6:57102042-57162808	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57125200-57133200	Enhancers	Rectal Smooth Muscle	rectum
2	chr6:57127800-57132200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:57128400-57132600	Weak transcription	Adipose Nuclei	Adipose
4	chr6:57128800-57132200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:57128800-57132600	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:57129800-57131400	Enhancers	HSMM	muscle
7	chr6:57129800-57132800	Enhancers	HSMMtube	muscle
8	chr6:57130000-57131400	Enhancers	HUVEC	blood vessel
9	chr6:57130200-57131200	Flanking Active TSS	NHLF	lung
10	chr6:57130200-57131400	Enhancers	Fetal Stomach	stomach
11	chr6:57130200-57132400	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr6:57130400-57131200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:57130400-57132000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:57130400-57132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:57130400-57133000	Enhancers	Stomach Smooth Muscle	stomach
16	chr6:57130600-57131200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:57130600-57131200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:57130600-57131200	Enhancers	HMEC	breast
19	chr6:57130600-57131200	Flanking Active TSS	NHDF-Ad	bronchial
20	chr6:57130800-57131200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:57130800-57131200	Active TSS	Fetal Lung	lung
22	chr6:57130800-57131200	Enhancers	NH-A	brain
23	chr6:57130800-57132400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:57131000-57131200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:57131000-57131200	Flanking Active TSS	Colon Smooth Muscle	Colon
26	chr6:57131000-57131200	Active TSS	Ovary	ovary
27	chr6:57131000-57132000	Weak transcription	NHEK	skin
28	chr6:57131000-57132200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:57131000-57132600	Weak transcription	Hela-S3	cervix
30	chr6:57131000-57132800	Enhancers	Osteobl	bone

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