Variant report

Variant	rs10081093
Chromosome Location	chr6:133452238-133452239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133451353..133453711-chr6:133454744..133456553,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6903893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908173	1.00[AMR][1000 genomes]
rs9321390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483537	1.00[AMR][1000 genomes]
rs9483543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493541	1.00[AMR][1000 genomes]
rs9493557	1.00[AMR][1000 genomes]
rs9493590	1.00[AMR][1000 genomes]
rs9493591	1.00[AMR][1000 genomes]
rs9493595	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133448200-133452600	Weak transcription	Brain Germinal Matrix	brain
2	chr6:133448600-133455200	Enhancers	Fetal Muscle Leg	muscle
3	chr6:133449200-133452800	Weak transcription	Left Ventricle	heart
4	chr6:133449600-133452800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:133449600-133453400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:133449800-133452800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:133450000-133452800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:133450000-133453400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:133450200-133453400	Enhancers	HSMMtube	muscle
10	chr6:133450400-133454000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:133450600-133452600	Weak transcription	Right Ventricle	heart
12	chr6:133451000-133453000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:133451000-133453400	Enhancers	Psoas Muscle	Psoas
14	chr6:133451400-133452400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:133451400-133453000	Enhancers	NHEK	skin
16	chr6:133451400-133453400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:133451400-133453400	Enhancers	HMEC	breast
18	chr6:133451400-133453800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:133451400-133454200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:133451400-133454400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr6:133451600-133452600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:133451600-133453400	Enhancers	A549	lung
23	chr6:133451600-133453400	Enhancers	Hela-S3	cervix
24	chr6:133451800-133453200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:133451800-133453200	Enhancers	Fetal Heart	heart
26	chr6:133451800-133453400	Enhancers	NH-A	brain
27	chr6:133451800-133453600	Enhancers	Colon Smooth Muscle	Colon
28	chr6:133451800-133454200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:133451800-133454200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:133451800-133454200	Enhancers	Fetal Muscle Trunk	muscle
31	chr6:133452000-133453600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:133452000-133453800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:133452000-133454200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr6:133452200-133452400	Enhancers	Aorta	Aorta
35	chr6:133452200-133452600	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr6:133452200-133452800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:133452200-133453000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:133452200-133453400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links